Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1177
         (407 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    26   2.6  
SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces pom...    25   3.4  
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha...    25   4.5  
SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyc...    25   6.0  
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    25   6.0  

>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
 Frame = -2

Query: 328 SMLSLVPVTMPMFTPSHKF---IQSHCDTVSPSPMGNPLKKNFLALCQRVPNPG*YLQAS 158
           S LS+ P + P+F+PS      + S    VS  P  +    N + L   V +P   + +S
Sbjct: 157 STLSMSPSSTPVFSPSASVSSKVASSVSYVSSEPSDSSSSTNTVILTTSVNSPA--VSSS 214

Query: 157 FLIHGSLSPLTAKAFSSSS 101
             +       T  A++SSS
Sbjct: 215 ETLTSVSITSTESAYTSSS 233


>SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 188

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = -1

Query: 146 WIFKSFNS*GLFKLIQLWDTFDSKLGVVRHCVRGP 42
           W   S    GL++++  +DT +++ G      +GP
Sbjct: 85  WFLNSVGPDGLYRMVSAFDTKEAQAGCTFGYTKGP 119


>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 496

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 81  VKGIPQLDELEKALAVKGLKDPWIRNEAWRYHP 179
           +KGI  LDEL+KA+ +K  +   +    +R  P
Sbjct: 243 IKGILTLDELQKAIKLKQTELDKLERRLYRPSP 275


>SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 442

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -2

Query: 169 LQASFLIHGSLSPLTAKA 116
           ++ASF+ HG +SPL  +A
Sbjct: 18  IEASFVPHGKISPLIKRA 35


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 164 SLISDPWIFKSFNS*GLFKLIQLWDTFDSKL 72
           + I DP++ +SF+   L KLI   +T D  L
Sbjct: 540 AFIRDPYLIESFDEEPLTKLISSLETDDPSL 570


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,643,955
Number of Sequences: 5004
Number of extensions: 33592
Number of successful extensions: 89
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)