Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1177
         (407 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0031 - 25215587-25216145,25218108-25218133,25218262-252184...    34   0.050
06_03_1164 + 28104181-28104272,28104359-28104989                       32   0.15 
09_04_0080 + 14393797-14393894,14395100-14395202,14395307-143954...    28   3.3  
04_03_0918 - 20806627-20806724,20807674-20807962                       27   5.7  
03_01_0362 - 2825880-2826563                                           27   5.7  
02_05_0691 - 30949234-30949243,30949613-30950001,30950425-309504...    27   7.6  

>02_05_0031 -
           25215587-25216145,25218108-25218133,25218262-25218486,
           25219809-25220111
          Length = 370

 Score = 33.9 bits (74), Expect = 0.050
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 2   GKQIIVNNGWSRTWAPVHSASLLPVYCQR 88
           G +++V NGW R WA   S +++ V C R
Sbjct: 269 GLELVVRNGWRRVWAEGDSKTVVDVVCDR 297


>06_03_1164 + 28104181-28104272,28104359-28104989
          Length = 240

 Score = 32.3 bits (70), Expect = 0.15
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 2   GKQIIVNNGWSRTWAPVHSASLLPVYCQR 88
           G ++ V NGW R WA   S +++ V C R
Sbjct: 139 GLELAVRNGWRRVWAEGDSKAVVDVVCDR 167


>09_04_0080 +
           14393797-14393894,14395100-14395202,14395307-14395427,
           14396208-14396287,14396702-14396878,14396992-14397215,
           14397881-14397887,14398807-14398888,14399188-14399384
          Length = 362

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 234 IGLGLTVSQWLWINLWEGVNMGMVTGTRE 320
           IG+G  +  WL+   WEG+ + +V  + E
Sbjct: 172 IGVGTVIDGWLYDGWWEGILLKLVAMSTE 200


>04_03_0918 - 20806627-20806724,20807674-20807962
          Length = 128

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = +1

Query: 187 ALAGREPENSSLEDFPLDWDSQYHSGSG*IYGRG*TWAWSRARG 318
           A+ G EPE  +  D    W+ Q  SG G    RG  W WS + G
Sbjct: 51  AMEGAEPERPAA-DVSDGWE-QNPSGGGGWRHRGSGWGWSPSSG 92


>03_01_0362 - 2825880-2826563
          Length = 227

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -2

Query: 334 TKSMLSLVPVTMPMFTPSHKFIQSHCDTVSPSPMGNP 224
           T  +L L P  +P   PS   I SHC  +S SP+ +P
Sbjct: 70  TALILDLSPSPLPASGPST--IASHCLDLSASPLADP 104


>02_05_0691 -
           30949234-30949243,30949613-30950001,30950425-30950449,
           30950594-30950688,30950842-30951359,30951652-30951736,
           30951842-30952633
          Length = 637

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 133 DLKIHGSEMRLGDITLDLALAGREPENS 216
           + ++HG EM L +I+ DLA +     NS
Sbjct: 519 ETRVHGLEMALDEISRDLAASSGRTSNS 546


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,662,668
Number of Sequences: 37544
Number of extensions: 226518
Number of successful extensions: 630
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)