Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1177
         (407 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20844| Best HMM Match : Ion_trans (HMM E-Value=0)                   30   0.84 
SB_36224| Best HMM Match : ASC (HMM E-Value=1.9e-38)                   29   1.1  
SB_43404| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.4  
SB_15605| Best HMM Match : p450 (HMM E-Value=1.4013e-45)               28   3.4  
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                27   5.9  
SB_16448| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.9  
SB_2863| Best HMM Match : Asp (HMM E-Value=1.2e-07)                    27   7.8  
SB_53582| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  
SB_11781| Best HMM Match : zf-C3HC4 (HMM E-Value=6.6e-16)              24   9.2  

>SB_20844| Best HMM Match : Ion_trans (HMM E-Value=0)
          Length = 2675

 Score = 29.9 bits (64), Expect = 0.84
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -1

Query: 143  IFKSFNS*GLFKLIQLWDTFDSKLGVVRHCVRGPMSVTTHCLLLFVY 3
            IF++F    + KL Q W T    L  + + V GP+   T  L+L +Y
Sbjct: 1669 IFRTFRLVRILKLAQSWKTMGKLLSTIGNSV-GPIGNITLILVLIIY 1714


>SB_36224| Best HMM Match : ASC (HMM E-Value=1.9e-38)
          Length = 451

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +3

Query: 144 PWIRNEAWRYHPGFGTRWQRARK 212
           PW+    W   PGF T  + ARK
Sbjct: 239 PWVEKHGWEIPPGFSTNVRLARK 261


>SB_43404| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 522

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 20/47 (42%), Positives = 26/47 (55%)
 Frame = -2

Query: 142 SLSPLTAKAFSSSSSCGIPLTVNWE**GTVYGGPCP*PPIVYYYLFT 2
           SLS L++ + SSSSS  IP+ V  +  GTV   P      +Y YL T
Sbjct: 274 SLSSLSSSSSSSSSSYSIPVRVTNKKDGTVKDSPF----AIYQYLNT 316


>SB_15605| Best HMM Match : p450 (HMM E-Value=1.4013e-45)
          Length = 454

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = -1

Query: 242 QSNGKSSKEEFSGSLPASAKSRVISPSLISDPWIFKSFNS*GLFKLIQLWDT 87
           +  G +  + F  SL    ++  + P  +  PW+FK + S   +KL+  +DT
Sbjct: 154 EKRGHTDAQVFISSLRGFWEA--LMPLTLLPPWVFKLYKSQSYWKLLHSFDT 203


>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 7381

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +1

Query: 7    TNNSKQWVVTDMGPRTQCLTTPSLLSKVSHNWM 105
            +NN+KQW+  D    T+  +  +   + SH W+
Sbjct: 2879 SNNNKQWLQVDFSAMTRVTSVGTQGRQNSHEWV 2911


>SB_16448| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 307

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = -2

Query: 304 TMPMFTPSHKFIQSHCDTVSPSPMGNPLKKNFLAL 200
           ++P+  P H F Q+H       P+ +PL+++ L++
Sbjct: 206 SLPLSPPHHPFTQAHEVLQQSYPLQSPLQRSHLSM 240


>SB_2863| Best HMM Match : Asp (HMM E-Value=1.2e-07)
          Length = 721

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +3

Query: 222 RGFPIG-LGLTVSQWLWINLW-EGVNMGMVTGTRES 323
           RG   G +G++++ W+W+ +W  G   G+V    ES
Sbjct: 23  RGCGYGVMGVSINSWVWVWVWSRGCGYGVVGVVMES 58


>SB_53582| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 393

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 313 VPVTMPMFTPSHKFIQSHCDTVSPSPM 233
           +P   PM  PSH+ +  H    +P PM
Sbjct: 176 MPAPPPMVVPSHRHVFHHVTHPAPPPM 202


>SB_11781| Best HMM Match : zf-C3HC4 (HMM E-Value=6.6e-16)
          Length = 293

 Score = 23.8 bits (49), Expect(2) = 9.2
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +1

Query: 181 DLALAGREPENSSLEDFPLDWDSQYHSGSG*IYGRG 288
           + A  G  PE+SS+ED  +  +S+  S S  I GRG
Sbjct: 251 ETASPGSSPEDSSIED-SIQGESRDSSLSELIKGRG 285



 Score = 21.0 bits (42), Expect(2) = 9.2
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = +1

Query: 16  SKQWVVTDMGPRTQCLTTP 72
           +++W ++  GPR +  T P
Sbjct: 207 NQEWFISTEGPRCEVKTLP 225


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,025,546
Number of Sequences: 59808
Number of extensions: 242060
Number of successful extensions: 605
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 740151420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)