Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1177
(407 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR456924-1|CAG33205.1| 98|Homo sapiens NDUFB3 protein. 61 2e-09
BC018183-1|AAH18183.1| 98|Homo sapiens NADH dehydrogenase (ubi... 61 2e-09
AF047183-1|AAC04268.1| 98|Homo sapiens NADH-ubiquinone oxidore... 61 2e-09
AF035839-1|AAC15590.1| 98|Homo sapiens NADH:ubiquinone oxidore... 61 2e-09
AC007272-1|AAX88972.1| 98|Homo sapiens unknown protein. 61 2e-09
Z97632-4|CAB10730.1| 755|Homo sapiens HIV-1 Tat specific factor... 29 6.0
U76992-1|AAB18823.1| 754|Homo sapiens Tat-SF1 protein. 29 6.0
BT006886-1|AAP35532.1| 755|Homo sapiens HIV TAT specific factor... 29 6.0
BC009896-1|AAH09896.1| 755|Homo sapiens HIV-1 Tat specific fact... 29 6.0
AB209303-1|BAD92540.1| 758|Homo sapiens HIV TAT specific factor... 29 8.0
>CR456924-1|CAG33205.1| 98|Homo sapiens NDUFB3 protein.
Length = 98
Score = 60.9 bits (141), Expect = 2e-09
Identities = 30/66 (45%), Positives = 40/66 (60%)
Frame = +3
Query: 57 VPHYSQFTVKGIPQLDELEKALAVKGLKDPWIRNEAWRYHPGFGTRWQRARKFFFRGFPI 236
+P Y Q+ ++G P L+ ++K LA KGL+DPW RNEAWRY GF + FF+GF
Sbjct: 16 LPDYRQWKIEGTP-LETIQKKLAAKGLRDPWGRNEAWRYMGGF-AKSVSFSDVFFKGFKW 73
Query: 237 GLGLTV 254
G V
Sbjct: 74 GFAAFV 79
>BC018183-1|AAH18183.1| 98|Homo sapiens NADH dehydrogenase
(ubiquinone) 1 beta subcomplex, 3, 12kDa protein.
Length = 98
Score = 60.9 bits (141), Expect = 2e-09
Identities = 30/66 (45%), Positives = 40/66 (60%)
Frame = +3
Query: 57 VPHYSQFTVKGIPQLDELEKALAVKGLKDPWIRNEAWRYHPGFGTRWQRARKFFFRGFPI 236
+P Y Q+ ++G P L+ ++K LA KGL+DPW RNEAWRY GF + FF+GF
Sbjct: 16 LPDYRQWKIEGTP-LETIQKKLAAKGLRDPWGRNEAWRYMGGF-AKSVSFSDVFFKGFKW 73
Query: 237 GLGLTV 254
G V
Sbjct: 74 GFAAFV 79
>AF047183-1|AAC04268.1| 98|Homo sapiens NADH-ubiquinone
oxidoreductase subunit CI-B12 protein.
Length = 98
Score = 60.9 bits (141), Expect = 2e-09
Identities = 30/66 (45%), Positives = 40/66 (60%)
Frame = +3
Query: 57 VPHYSQFTVKGIPQLDELEKALAVKGLKDPWIRNEAWRYHPGFGTRWQRARKFFFRGFPI 236
+P Y Q+ ++G P L+ ++K LA KGL+DPW RNEAWRY GF + FF+GF
Sbjct: 16 LPDYRQWKIEGTP-LETIQKKLAAKGLRDPWGRNEAWRYMGGF-AKSVSFSDVFFKGFKW 73
Query: 237 GLGLTV 254
G V
Sbjct: 74 GFAAFV 79
>AF035839-1|AAC15590.1| 98|Homo sapiens NADH:ubiquinone
oxidoreductase B12 subunit protein.
Length = 98
Score = 60.9 bits (141), Expect = 2e-09
Identities = 30/66 (45%), Positives = 40/66 (60%)
Frame = +3
Query: 57 VPHYSQFTVKGIPQLDELEKALAVKGLKDPWIRNEAWRYHPGFGTRWQRARKFFFRGFPI 236
+P Y Q+ ++G P L+ ++K LA KGL+DPW RNEAWRY GF + FF+GF
Sbjct: 16 LPDYRQWKIEGTP-LETIQKKLAAKGLRDPWGRNEAWRYMGGF-AKSVSFSDVFFKGFKW 73
Query: 237 GLGLTV 254
G V
Sbjct: 74 GFAAFV 79
>AC007272-1|AAX88972.1| 98|Homo sapiens unknown protein.
Length = 98
Score = 60.9 bits (141), Expect = 2e-09
Identities = 30/66 (45%), Positives = 40/66 (60%)
Frame = +3
Query: 57 VPHYSQFTVKGIPQLDELEKALAVKGLKDPWIRNEAWRYHPGFGTRWQRARKFFFRGFPI 236
+P Y Q+ ++G P L+ ++K LA KGL+DPW RNEAWRY GF + FF+GF
Sbjct: 16 LPDYRQWKIEGTP-LETIQKKLAAKGLRDPWGRNEAWRYMGGF-AKSVSFSDVFFKGFKW 73
Query: 237 GLGLTV 254
G V
Sbjct: 74 GFAAFV 79
>Z97632-4|CAB10730.1| 755|Homo sapiens HIV-1 Tat specific factor 1
protein.
Length = 755
Score = 29.1 bits (62), Expect = 6.0
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = +1
Query: 124 LLKDLKIHGSEMRLGDITLDLALAGREPENSSLED 228
L KDL GSE L + LD L + ENS ED
Sbjct: 570 LEKDLDEEGSEKELHENVLDKELEENDSENSEFED 604
>U76992-1|AAB18823.1| 754|Homo sapiens Tat-SF1 protein.
Length = 754
Score = 29.1 bits (62), Expect = 6.0
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = +1
Query: 124 LLKDLKIHGSEMRLGDITLDLALAGREPENSSLED 228
L KDL GSE L + LD L + ENS ED
Sbjct: 569 LEKDLDEEGSEKELHENVLDKELEENDSENSEFED 603
>BT006886-1|AAP35532.1| 755|Homo sapiens HIV TAT specific factor 1
protein.
Length = 755
Score = 29.1 bits (62), Expect = 6.0
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = +1
Query: 124 LLKDLKIHGSEMRLGDITLDLALAGREPENSSLED 228
L KDL GSE L + LD L + ENS ED
Sbjct: 570 LEKDLDEEGSEKELHENVLDKELEENDSENSEFED 604
>BC009896-1|AAH09896.1| 755|Homo sapiens HIV-1 Tat specific factor
1 protein.
Length = 755
Score = 29.1 bits (62), Expect = 6.0
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = +1
Query: 124 LLKDLKIHGSEMRLGDITLDLALAGREPENSSLED 228
L KDL GSE L + LD L + ENS ED
Sbjct: 570 LEKDLDEEGSEKELHENVLDKELEENDSENSEFED 604
>AB209303-1|BAD92540.1| 758|Homo sapiens HIV TAT specific factor 1
variant protein.
Length = 758
Score = 28.7 bits (61), Expect = 8.0
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = +1
Query: 124 LLKDLKIHGSEMRLGDITLDLALAGREPENSSLED 228
L KDL GSE L + LD L + ENS ED
Sbjct: 573 LEKDLDEEGSEKELHENILDKELEENDSENSEFED 607
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,785,484
Number of Sequences: 237096
Number of extensions: 1327902
Number of successful extensions: 6248
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6248
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 3043111070
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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