Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1177
(407 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70034-4|CAA93855.1| 103|Caenorhabditis elegans Hypothetical pr... 51 4e-07
Z68507-3|CAA92824.2| 1134|Caenorhabditis elegans Hypothetical pr... 28 3.0
Z11505-3|CAA77584.2| 468|Caenorhabditis elegans Hypothetical pr... 27 5.2
U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical pr... 27 6.9
Z92827-2|CAB07327.2| 394|Caenorhabditis elegans Hypothetical pr... 26 9.1
Z83110-2|CAB05524.1| 299|Caenorhabditis elegans Hypothetical pr... 26 9.1
Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical p... 26 9.1
U97005-4|AAB52283.1| 314|Caenorhabditis elegans Hypothetical pr... 26 9.1
U50309-4|AAG24133.1| 267|Caenorhabditis elegans Hypothetical pr... 26 9.1
AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical ... 26 9.1
AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha... 26 9.1
>Z70034-4|CAA93855.1| 103|Caenorhabditis elegans Hypothetical
protein C18E9.4 protein.
Length = 103
Score = 50.8 bits (116), Expect = 4e-07
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Frame = +3
Query: 51 YTVPHYSQFT-VKGIPQLDELEKALAVKGLKDPWIRNEAWRY---HPGFGTRWQRARKFF 218
+ +P+YS ++ + PQL + EK LA GLKDPWIRN + Y +P +W +K
Sbjct: 9 FKIPNYSIYSNFRDFPQLAQHEKRLAQIGLKDPWIRNYVYLYDRKYPHVVGQWAHFKKLI 68
Query: 219 FRGFPIGLGLTVS 257
G+ G+ T +
Sbjct: 69 LPGWKAGVAFTAA 81
>Z68507-3|CAA92824.2| 1134|Caenorhabditis elegans Hypothetical protein
M18.5 protein.
Length = 1134
Score = 27.9 bits (59), Expect = 3.0
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +1
Query: 133 DLKIHGSEMRLGDITLDLALAGREPENSSLEDFPLDWDSQY 255
DLK+ E+ + D+ ++L + E+ DW+SQ+
Sbjct: 908 DLKVMNEEVAVADVMRSVSLLSYRMLEGNFEEVAKDWNSQW 948
>Z11505-3|CAA77584.2| 468|Caenorhabditis elegans Hypothetical
protein F59B2.5 protein.
Length = 468
Score = 27.1 bits (57), Expect = 5.2
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 282 EGVNMGMVTGTRESIDFVVNCLHHCS*NKIELL 380
+GV + G +E ID + NC+ + NK E L
Sbjct: 137 QGVGPALDHGKKEKIDLLTNCIGWATSNKREFL 169
>U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical
protein F35A5.1 protein.
Length = 1274
Score = 26.6 bits (56), Expect = 6.9
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 310 PVTMPMFTPSHKFIQSHCDTVSPSPMGNPLKK 215
PV+ P PS K + + V P+P+ NP+KK
Sbjct: 859 PVSKPK-EPSPKKAEPNSPVVPPTPVKNPVKK 889
>Z92827-2|CAB07327.2| 394|Caenorhabditis elegans Hypothetical
protein C29F7.2 protein.
Length = 394
Score = 26.2 bits (55), Expect = 9.1
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +3
Query: 102 DELEKALAVKGLKDPWIRNE 161
D+L L KG+K PW R E
Sbjct: 314 DKLSSGLEAKGVKMPWTREE 333
>Z83110-2|CAB05524.1| 299|Caenorhabditis elegans Hypothetical
protein F57C2.2 protein.
Length = 299
Score = 26.2 bits (55), Expect = 9.1
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 69 SQFTVKGIPQLDELEKALAVKGLKD 143
S+ VK I Q+D +EKA A+K D
Sbjct: 255 SKLLVKSIRQMDSIEKAKALKSSPD 279
>Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 26.2 bits (55), Expect = 9.1
Identities = 12/44 (27%), Positives = 17/44 (38%)
Frame = -2
Query: 310 PVTMPMFTPSHKFIQSHCDTVSPSPMGNPLKKNFLALCQRVPNP 179
P T H S C+ P +GNP + L C++ P
Sbjct: 785 PFTGECLNCRHNTTGSRCELCKPGHVGNPSRGGELGACEQCECP 828
>U97005-4|AAB52283.1| 314|Caenorhabditis elegans Hypothetical
protein F19F10.5 protein.
Length = 314
Score = 26.2 bits (55), Expect = 9.1
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -1
Query: 245 SQSNGKSSKEEFSGSLPASAKSRVISPSLISDPW 144
S SN S++ + S P S+ VI+P ++ DP+
Sbjct: 238 SSSNSSSARTMSATSSPTSSLEDVINPPVLIDPF 271
>U50309-4|AAG24133.1| 267|Caenorhabditis elegans Hypothetical
protein F58G4.4 protein.
Length = 267
Score = 26.2 bits (55), Expect = 9.1
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -1
Query: 191 SAKSRVISPSLISDPWIFKSFNS 123
S K V P L++DPW+ K+ ++
Sbjct: 95 SGKKNVRLPLLVNDPWVHKTISN 117
>AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 26.2 bits (55), Expect = 9.1
Identities = 12/44 (27%), Positives = 17/44 (38%)
Frame = -2
Query: 310 PVTMPMFTPSHKFIQSHCDTVSPSPMGNPLKKNFLALCQRVPNP 179
P T H S C+ P +GNP + L C++ P
Sbjct: 785 PFTGECLNCRHNTTGSRCELCKPGHVGNPSRGGELGACEQCECP 828
>AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3102
Score = 26.2 bits (55), Expect = 9.1
Identities = 12/44 (27%), Positives = 17/44 (38%)
Frame = -2
Query: 310 PVTMPMFTPSHKFIQSHCDTVSPSPMGNPLKKNFLALCQRVPNP 179
P T H S C+ P +GNP + L C++ P
Sbjct: 785 PFTGECLNCRHNTTGSRCELCKPGHVGNPSRGGELGACEQCECP 828
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,878,852
Number of Sequences: 27780
Number of extensions: 182206
Number of successful extensions: 537
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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