Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1177
         (407 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g26140.1 68418.m03109 lysine decarboxylase family protein con...    27   4.8  
At5g25820.1 68418.m03064 exostosin family protein contains Pfam ...    27   6.4  
At5g25110.1 68418.m02975 CBL-interacting protein kinase 25 (CIPK...    27   6.4  
At5g02810.1 68418.m00223 pseudo-response regulator 7 (APRR7) ide...    27   6.4  
At5g62580.1 68418.m07855 expressed protein                             26   8.5  
At5g18230.1 68418.m02139 transcription regulator NOT2/NOT3/NOT5 ...    26   8.5  
At4g34680.1 68417.m04923 GATA transcription factor 3, putative (...    26   8.5  

>At5g26140.1 68418.m03109 lysine decarboxylase family protein
           contains Pfam profile PF03641: decarboxylase family
           protein
          Length = 143

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 301 MPMFTPSHKFIQSHCDTVSPSPMGN 227
           M ++TPSHK+I SH  +    P+G+
Sbjct: 110 MELYTPSHKYIASH-QSWKVEPLGD 133


>At5g25820.1 68418.m03064 exostosin family protein contains Pfam
           profile: PF03016 exostosin family
          Length = 654

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 13/33 (39%), Positives = 14/33 (42%)
 Frame = -2

Query: 310 PVTMPMFTPSHKFIQSHCDTVSPSPMGNPLKKN 212
           PV +P   PS         T S  P  NP KKN
Sbjct: 192 PVALPSINPSPVMKNETLPTTSKVPERNPTKKN 224


>At5g25110.1 68418.m02975 CBL-interacting protein kinase 25 (CIPK25)
           identical to CBL-interacting protein kinase 25
           [Arabidopsis thaliana] gi|17646697|gb|AAL41008
          Length = 488

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -1

Query: 224 SKEEFSGSLPASAKSRVISPSLISDPWIFKSFNS*GLFKLIQL 96
           SK   S  L      R+  P+++  PW  K+ NS   FK+ +L
Sbjct: 270 SKRLISKLLVVDPNKRISIPAIMRTPWFRKNINSPIEFKIDEL 312


>At5g02810.1 68418.m00223 pseudo-response regulator 7 (APRR7)
           identical to pseudo-response regulator 7 GI:10281004
           from [Arabidopsis thaliana]
          Length = 727

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 17/64 (26%), Positives = 26/64 (40%)
 Frame = -1

Query: 248 ESQSNGKSSKEEFSGSLPASAKSRVISPSLISDPWIFKSFNS*GLFKLIQLWDTFDSKLG 69
           +S  +  SS E  +GS+  +A       S     W  K+ +     + + LWD  DS   
Sbjct: 226 KSDQDSGSSDENENGSIGLNASDGSSDGSGAQSSWTKKAVDVDDSPRAVSLWDRVDSTCA 285

Query: 68  VVRH 57
            V H
Sbjct: 286 QVVH 289


>At5g62580.1 68418.m07855 expressed protein
          Length = 615

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 133 DLKIHGSEMRLGDITLDLALAGREPENSS 219
           + ++HG E+ L +I+ DLA++     N S
Sbjct: 491 ETRVHGLELALDEISYDLAVSNGRMSNGS 519


>At5g18230.1 68418.m02139 transcription regulator NOT2/NOT3/NOT5
           family protein contains Pfam domain PF04153: NOT2 / NOT3
           / NOT5 family
          Length = 843

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 96  QLDELEKALAVKGLKDPWIRNEAWRYHPGFGTRWQRARK 212
           Q +  ++ LA K LK      ++WRYH  F T +QR ++
Sbjct: 759 QQNSYQQYLAAKELK-----KQSWRYHRKFNTWFQRHKE 792


>At4g34680.1 68417.m04923 GATA transcription factor 3, putative
           (GATA-3) identical to GATA-binding transcription factor
           GATA-3 [Arabidopsis thaliana] gi|2959734|emb|CAA74001;
           identical to cDNA for GATA transcription factor 3
           GI:2959733
          Length = 269

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 7   TNNSKQWVVTDMGPRTQC 60
           TNN+ QW    +GP+T C
Sbjct: 187 TNNTPQWRTGPVGPKTLC 204


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,637,126
Number of Sequences: 28952
Number of extensions: 182704
Number of successful extensions: 556
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 605614832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)