Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1175
         (581 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPACUNK12.02c |cmk1||calcium/calmodulin-dependent protein kinase...    27   2.0  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   3.5  
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe...    26   4.6  
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe...    26   4.6  
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe...    26   4.6  
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe...    26   4.6  
SPBC1703.03c |||armadillo repeat protein, unknown biological rol...    25   6.1  
SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB comp...    25   8.1  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   8.1  

>SPACUNK12.02c |cmk1||calcium/calmodulin-dependent protein kinase
           Cmk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 6/34 (17%)
 Frame = -1

Query: 521 PFLSKTR------LPEVQLILNATRNFKTAYNYI 438
           PFLS+ R      LP V+   NA + F+TAYN +
Sbjct: 289 PFLSEKRPATSNLLPNVRENFNARKTFRTAYNAV 322


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +3

Query: 66  HLLVGRVKREIQLISTKLS 122
           HLLV R+K+E+ L+ T+ +
Sbjct: 596 HLLVNRIKQELDLLKTRFT 614


>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -1

Query: 461 FKTAYNYIFFCFYAIFSVIN 402
           F  ++ Y FF F+A+FSVIN
Sbjct: 281 FLISFGY-FFTFFAVFSVIN 299


>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -1

Query: 461 FKTAYNYIFFCFYAIFSVIN 402
           F  ++ Y FF F+A+FSVIN
Sbjct: 281 FLISFGY-FFTFFAVFSVIN 299


>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -1

Query: 461 FKTAYNYIFFCFYAIFSVIN 402
           F  ++ Y FF F+A+FSVIN
Sbjct: 281 FLISFGY-FFTFFAVFSVIN 299


>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -1

Query: 461 FKTAYNYIFFCFYAIFSVIN 402
           F  ++ Y FF F+A+FSVIN
Sbjct: 281 FLISFGY-FFTFFAVFSVIN 299


>SPBC1703.03c |||armadillo repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 664

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 484 NCTSGSLVLLKNGQIICKLV 543
           +CT G L LLKNG ++ KL+
Sbjct: 65  SCTEGRLYLLKNG-LVSKLI 83


>SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB complex
           subunit Brf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 500

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +3

Query: 393 YYLINDGKNCIKTKK--YIVISCFEVTCRV 476
           Y+ +    N IK ++  Y+V SC  + CR+
Sbjct: 117 YFTLAINNNFIKGRRSQYVVASCLYIVCRI 146


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 8/22 (36%), Positives = 17/22 (77%)
 Frame = +3

Query: 279  KQLNVISSYNLKNIVSGLNGAF 344
            K++  +S YN+  +V+G++GA+
Sbjct: 1123 KKIQSVSGYNIDAMVAGVDGAY 1144


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,821,231
Number of Sequences: 5004
Number of extensions: 32135
Number of successful extensions: 76
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)