Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1174
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual        28   1.1  
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces...    28   1.5  
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S...    27   2.6  
SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyc...    27   3.4  
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    26   5.9  
SPAC22F3.11c |snu23||U4/U6 x U5 tri-snRNP complex subunit Snu23|...    25   7.8  
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo...    25   7.8  

>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = -3

Query: 202 HPSYSV*RRLVSLCTPRTDRRDQTPLSYCPSRIETSEVSQCCR 74
           HP   V        T R D  + T L  CP RI  +E  + C+
Sbjct: 186 HPDVGVELVRAGADTLRKDSENHTALEVCPDRIVCNEFLEACK 228


>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 681

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -2

Query: 284 TTYLQGSAGVFYGLQLGSNKTCAVAVYSSFLFCLKEAS 171
           ++Y   +A   YGL L     C+   + SFLF LK A+
Sbjct: 472 SSYEDYTATFIYGLYLRHGLACSPKTHVSFLFLLKTAT 509


>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
           Raf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 638

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 499 RVDFENTNKTTFSENKS*LDRFIAPEIPC 585
           +VDF+  N+  F E     D F   E+PC
Sbjct: 26  KVDFDTNNEEFFEEEFEIYDPFYRAELPC 54


>SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 615

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 9/26 (34%), Positives = 19/26 (73%)
 Frame = -2

Query: 578 ISGAINRSSYDLFSENVVLFVFSKST 501
           ++G++++ SY+LFS++   FV+   T
Sbjct: 1   MAGSVDKPSYELFSKDTRAFVYGMQT 26


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1158

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 76  DSTGKLQKFLFSKDNMKAAFDLDGLYAECK 165
           D   +L+K++  ++N     DLD +YAEC+
Sbjct: 4   DLLSRLKKYIHDEENS----DLDSIYAECE 29


>SPAC22F3.11c |snu23||U4/U6 x U5 tri-snRNP complex subunit
           Snu23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 151

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +1

Query: 460 KKNSIIIRQ*MSGRVDFE-NTNKTT 531
           KKN ++I    + R+DFE + NKTT
Sbjct: 14  KKNEVVITGGRTQRIDFEKDVNKTT 38


>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
           Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3

Query: 558 SIYRPRNPLYTKFYENRWNRFR 623
           S+ +PR      F E  WNRFR
Sbjct: 82  SVEKPRGRNMNAFEETSWNRFR 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,574,272
Number of Sequences: 5004
Number of extensions: 49731
Number of successful extensions: 118
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)