Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1174
         (696 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0516 + 25833801-25834046,25834412-25834532,25834636-258348...    32   0.50 
09_04_0526 + 18332915-18333605,18335044-18335242,18335914-18336751     29   3.5  
01_06_0876 - 32654209-32654238,32654357-32654672,32654833-326549...    29   4.7  
01_05_0683 + 24260627-24260759,24262408-24262610                       28   6.2  
05_05_0318 + 24052022-24053858,24053935-24054132,24054363-24055351     28   8.1  
03_06_0224 - 32483363-32483671,32483765-32483929,32484957-32485301     28   8.1  

>04_04_0516 +
           25833801-25834046,25834412-25834532,25834636-25834821,
           25834918-25834944,25836203-25836351,25836553-25836602,
           25837181-25837289,25837395-25837532,25838184-25838463,
           25838533-25838656,25838994-25839003
          Length = 479

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = -2

Query: 347 SYYLTLANSQTV-PE-PKTTEGETTYLQGSAGVFYGLQLGSNKTCAV 213
           SYY   ANS    PE P T E ET  L        GL + +NKTC++
Sbjct: 201 SYYADFANSHVYEPEKPYTPEPETQRLSTLYNADVGLYMLANKTCSI 247


>09_04_0526 + 18332915-18333605,18335044-18335242,18335914-18336751
          Length = 575

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -3

Query: 619 KRFQRFS*NLVYRGFRGR*IDLATIYFQKTLFYSCFQN 506
           +RF R   N  + GF+G+  DL  I   + L +  FQN
Sbjct: 272 RRFDRIIFNFPHAGFKGKEDDLHMINLHRELVWGFFQN 309


>01_06_0876 -
           32654209-32654238,32654357-32654672,32654833-32654901,
           32655238-32655275,32655418-32655478,32655550-32655617,
           32655729-32655889,32656687-32656751,32656883-32656956,
           32658158-32658245,32658800-32658879,32659168-32659224,
           32659332-32659404,32659524-32659762,32659846-32660025,
           32660150-32660440
          Length = 629

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = -1

Query: 522 IRVFKINSSRHLLANNNTIFLN*GQLTALKTQQEGVIKKSV 400
           + VFK+ +SR +  N+  I +  G   ++ T+ E VIK ++
Sbjct: 281 VTVFKVQASRLVALNSKLIGIKVGDFRSVVTESEDVIKAAL 321


>01_05_0683 + 24260627-24260759,24262408-24262610
          Length = 111

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = -3

Query: 247 GCNWAVIRPA---LWRSTHPSYSV*RRLVSLCTPRTDRRDQTPLS 122
           G NW  IR A   +  S+HP Y++ R   S  T R +  D  P+S
Sbjct: 34  GTNWLRIRHAAASVLPSSHPDYTIDRASASFVTRRLNDWDWGPVS 78


>05_05_0318 + 24052022-24053858,24053935-24054132,24054363-24055351
          Length = 1007

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +3

Query: 204 VDRHSAGLITAQLQ-PVEHTRRPLKICGFSFCSFWLRHGL 320
           +D H+A ++ ++L  P  +    ++IC   FC  WL++GL
Sbjct: 82  LDEHAAEVLRSKLAGPSNYHHLKVRIC---FCCIWLKNGL 118


>03_06_0224 - 32483363-32483671,32483765-32483929,32484957-32485301
          Length = 272

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = -2

Query: 566 INRSSYDLFSENVVLFVFSKSTLPDIYWR 480
           ++ SSY + S  +V F F+K TL ++YW+
Sbjct: 158 VSNSSYTVTSFTLV-FEFNKGTLQNLYWK 185


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,016,590
Number of Sequences: 37544
Number of extensions: 298056
Number of successful extensions: 735
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)