Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1174
         (696 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21324-7|AAA62566.1|  265|Caenorhabditis elegans Hypothetical pr...    54   1e-07
AC024757-1|AAF59450.3|  490|Caenorhabditis elegans Hypothetical ...    29   2.4  

>U21324-7|AAA62566.1|  265|Caenorhabditis elegans Hypothetical
           protein C35D10.10 protein.
          Length = 265

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 28/66 (42%), Positives = 40/66 (60%)
 Frame = +1

Query: 4   PTSRQLPTVMVMSEGREKMRRPXPDSTGKLQKFLFSKDNMKAAFDLDGLYAECKEKLASF 183
           P SRQLPT+ V  + +E  RRP  + + +   F+FS++N   AFDL  LY E KEK  + 
Sbjct: 201 PMSRQLPTICVFKDAKEIARRPLVNDSRRAVPFVFSEENCVLAFDLLNLYNEQKEKKGA- 259

Query: 184 RQNKKD 201
           +  K+D
Sbjct: 260 KAKKED 265


>AC024757-1|AAF59450.3|  490|Caenorhabditis elegans Hypothetical
           protein Y37E11AL.5 protein.
          Length = 490

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +2

Query: 545 NRS*IDLSPPKSPVYQIL*KSLEPFPRFRLYMYI 646
           N +  +L  PKSPV  I   SLEPF   R+ +Y+
Sbjct: 76  NATLFELLEPKSPVLSIKPDSLEPFGTTRMSIYM 109


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,223,179
Number of Sequences: 27780
Number of extensions: 278933
Number of successful extensions: 641
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)