Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1174
         (696 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g39110.1 68417.m05538 protein kinase family protein contains ...    29   3.9  
At3g56740.1 68416.m06311 ubiquitin-associated (UBA)/TS-N domain-...    29   3.9  
At3g45850.1 68416.m04962 kinesin motor protein-related kinesin-r...    29   3.9  
At1g49980.1 68414.m05609 UMUC-like DNA repair family protein low...    29   3.9  
At2g28620.1 68415.m03479 kinesin motor protein-related                 28   5.1  
At2g36200.1 68415.m04444 kinesin motor protein-related                 27   9.0  

>At4g39110.1 68417.m05538 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 878

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = -2

Query: 233 SNKTCAVAVYSSFLFCLKEASFSLHSAYRPSRSNAAFILSFE 108
           +N     AV   +L  + +A F+L   +RP +S+AAFI + E
Sbjct: 168 NNNDSQAAVQKEYLVNMTDAQFALR--FRPMKSSAAFINAIE 207


>At3g56740.1 68416.m06311 ubiquitin-associated (UBA)/TS-N
           domain-containing protein contains Pfam profile PF00627:
           UBA/TS-N domain
          Length = 293

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/53 (28%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
 Frame = -2

Query: 608 TIFIKFGIQGISGAINRSSYDLFSE----NVVLFVFSKSTLPDIYWRIIILFF 462
           T+F  FGIQG S  +  S  D+F +     +++  F+ S+ P++ + + +L++
Sbjct: 25  TVF--FGIQGRSSKLGLSYQDIFEKFRIWKLIMSTFAFSSTPELMFGLYLLYY 75


>At3g45850.1 68416.m04962 kinesin motor protein-related
           kinesin-related protein TKRP125, Nicotiana tabacum,
           PIR:T02017
          Length = 1058

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 236 GSNKTCAVAVYSSFLFCLKEASFSLHSAYR 147
           G  KTC +A  S  + CL+E   +L  A+R
Sbjct: 357 GKTKTCVIATISPSIHCLEETLSTLDYAHR 386


>At1g49980.1 68414.m05609 UMUC-like DNA repair family protein low
           similarity to DNA polymerase kappa [Mus musculus]
           GI:14279087; contains Pfam profile PF00817:
           ImpB/MucB/SamB family
          Length = 785

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +1

Query: 37  MSEGREKMRRPXPDSTGKLQKFLFSKDNMKAAFDLD 144
           MS+  E++R   P S G + KF+  KD+ + A DLD
Sbjct: 426 MSQFVEEIRNSDP-SQGTITKFIVQKDSSRQAQDLD 460


>At2g28620.1 68415.m03479 kinesin motor protein-related 
          Length = 1076

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 236 GSNKTCAVAVYSSFLFCLKEASFSLHSAYR 147
           G  KTC +A  S  + CL+E   +L  A+R
Sbjct: 359 GKTKTCVIATVSPSVHCLEETLSTLDYAHR 388


>At2g36200.1 68415.m04444 kinesin motor protein-related 
          Length = 1056

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 236 GSNKTCAVAVYSSFLFCLKEASFSLHSAYR 147
           G  KTC +A  S  + CL+E   +L  A+R
Sbjct: 326 GRTKTCIIATVSPAVHCLEETLSTLDYAHR 355


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,182,313
Number of Sequences: 28952
Number of extensions: 251646
Number of successful extensions: 555
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)