Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1173
         (576 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       22   3.3  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   5.7  
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    21   9.9  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    21   9.9  

>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = -2

Query: 305 ERHARHIESEYRGELQQRGASVTGSQ 228
           +RH RH ES +   L    A    S+
Sbjct: 90  DRHERHFESSFGNNLHSEKAKFNESK 115


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +3

Query: 537 PGATSRPPPTRS 572
           PGATS+PP   S
Sbjct: 121 PGATSQPPTDNS 132


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 349 PRPNTAASAAPDPTWND 299
           PRP  A+  AP+P  N+
Sbjct: 258 PRPAPASRNAPEPADNN 274


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -1

Query: 528 TTRTERSGNGYPAPRSPPPQSL 463
           T  T  S + Y   +SP P+S+
Sbjct: 206 TASTASSASNYSPSQSPEPESV 227


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,879
Number of Sequences: 336
Number of extensions: 1677
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14308417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)