Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1173
         (576 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomy...    85   5e-18
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    32   0.052
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    29   0.49 
SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c...    28   1.1  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    25   7.9  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    25   7.9  

>SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 85.4 bits (202), Expect = 5e-18
 Identities = 35/76 (46%), Positives = 58/76 (76%)
 Frame = +1

Query: 1   ELVTSLGVPPERIIFANPAKMASHIRYASAVGVDVMTFDSEIELMKIKQYMPHAQLLIRI 180
           E +  LGV P+RI++ANP K  +++RYA++ G+++MTFD+  EL K+KQ+ P+++LL+RI
Sbjct: 125 EQILGLGVSPDRIVYANPCKAITYVRYAASKGINLMTFDNADELYKVKQHHPNSRLLLRI 184

Query: 181 RCDAASAQCPLGIKFG 228
             D +++ C L +KFG
Sbjct: 185 STDDSNSLCRLSLKFG 200



 Score = 40.3 bits (90), Expect = 2e-04
 Identities = 19/40 (47%), Positives = 27/40 (67%)
 Frame = +3

Query: 255 LLKLASVLGLDVAGVSFHVGSGAAEAAVFGRGVQLARSLF 374
           LL +A  L L+V GVSFHVGSG+ + + F   +Q +R +F
Sbjct: 209 LLDIAKSLELNVVGVSFHVGSGSYDPSAFLDAIQRSRQVF 248



 Score = 32.7 bits (71), Expect = 0.040
 Identities = 11/20 (55%), Positives = 19/20 (95%)
 Frame = +2

Query: 515 SVRVVAEPGRYFAAAAYTLA 574
           S+RV++EPGR+F ++++TLA
Sbjct: 290 SIRVISEPGRFFVSSSFTLA 309


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 32.3 bits (70), Expect = 0.052
 Identities = 16/50 (32%), Positives = 20/50 (40%)
 Frame = -2

Query: 371 QRARQLHAAPEHRRLRRTRPHVERHARHIESEYRGELQQRGASVTGSQPN 222
           +R R  H    HRR    R H+ RH RH  + Y  +   R        PN
Sbjct: 141 ERTRSNHRHGSHRRHEPYRTHLSRHHRHSTTNYHSKRDDRYERRREHSPN 190


>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 29.1 bits (62), Expect = 0.49
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = -2

Query: 368 RARQLHAAPEHRRLRRTRPHVERHARHIESEYRGELQQRGASVTGSQP-NLMPSGHWAEA 192
           + RQL  +PEH R R     V  +  H+  E   ++     +V GSQ     P+G     
Sbjct: 83  KQRQLPHSPEHERSRSPIASVVSYRSHMTLEDENQIFNAEMAVRGSQSLQRRPTGRSVRG 142

Query: 191 ASQRM 177
           + +R+
Sbjct: 143 SMRRL 147


>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 465

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -1

Query: 102 VDPDGGRVTDVRRHFSRIREYYPLG 28
           +D   GRVT + R FSR R+Y  +G
Sbjct: 189 IDKSVGRVTKLGRSFSRARDYDAMG 213


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +3

Query: 156 ARAVVDPHPLRRGLGPVPARHQVRLRSRHGSSALLKLASVL 278
           ++AV+ PH +R   GP+   H   L + H  S++  + S++
Sbjct: 535 SQAVIVPHAIRIISGPLGLVHPDPLVASHARSSMQTIESLI 575


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 373 NSERASCTPRPNTAASAAPDPT 308
           +S  +S TP P T +S  P PT
Sbjct: 844 SSTTSSITPTPTTTSSITPTPT 865


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,632,965
Number of Sequences: 5004
Number of extensions: 23827
Number of successful extensions: 98
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)