Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1173
(576 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0200 + 2400929-2402161 80 1e-15
09_06_0142 - 21107878-21109104 79 3e-15
02_03_0240 - 16739628-16740369,16740392-16740978 72 3e-13
01_07_0333 - 42813789-42814073,42814229-42814315,42815083-428151... 29 2.7
05_07_0187 + 28267022-28267528 28 6.1
01_07_0066 - 40855497-40855967,40856051-40856195,40856303-40856607 28 6.1
11_02_0105 - 8336309-8336392,8336514-8336579,8337279-8337431,833... 27 8.1
03_03_0249 + 15832086-15833261 27 8.1
02_04_0520 - 23628183-23628195,23629354-23630036 27 8.1
01_02_0107 - 11197013-11197244,11197384-11197514 27 8.1
>04_01_0200 + 2400929-2402161
Length = 410
Score = 79.8 bits (188), Expect = 1e-15
Identities = 35/80 (43%), Positives = 54/80 (67%), Gaps = 1/80 (1%)
Frame = +1
Query: 1 ELVTSLGVPPERIIFANPAKMASHIRYASAVGVDVMTFDSEIELMKIKQYMPHAQLLIRI 180
E V +LGVPP I++ANP K +H+ +A+ GV+V T+DSE E+ K+K+ P +LL+RI
Sbjct: 108 EAVLALGVPPAAIVYANPCKPGAHVAFAAEAGVNVTTYDSEEEVAKVKRCHPSCELLLRI 167
Query: 181 RC-DAASAQCPLGIKFGCDP 237
+ D + LG+K+G +P
Sbjct: 168 KAPDCGGVKVDLGLKYGANP 187
Score = 50.8 bits (116), Expect = 8e-07
Identities = 25/43 (58%), Positives = 31/43 (72%)
Frame = +3
Query: 255 LLKLASVLGLDVAGVSFHVGSGAAEAAVFGRGVQLARSLFSAA 383
LL+ A GL VAGVSFHVGSGA+ AAV+ ++ AR+ F AA
Sbjct: 193 LLRAARRAGLGVAGVSFHVGSGASRAAVYRGAIEAARAAFDAA 235
Score = 31.5 bits (68), Expect = 0.50
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +2
Query: 515 SVRVVAEPGRYFAAAAYTLA 574
+V ++ EPGRYFA A+TLA
Sbjct: 279 TVELIGEPGRYFAETAFTLA 298
>09_06_0142 - 21107878-21109104
Length = 408
Score = 79.0 bits (186), Expect = 3e-15
Identities = 35/80 (43%), Positives = 56/80 (70%), Gaps = 1/80 (1%)
Frame = +1
Query: 1 ELVTSLGVPPERIIFANPAKMASHIRYASAVGVDVMTFDSEIELMKIKQYMPHAQLLIRI 180
E V +LGV P I++ANP K +H+ YA+ VGV++ T+DSE E+ K+++ P +LL+RI
Sbjct: 102 EAVLALGVRPATIVYANPCKPEAHLEYAAEVGVNLTTYDSEEEVAKVRRCHPRCELLLRI 161
Query: 181 RC-DAASAQCPLGIKFGCDP 237
+ D+ A+ LG+K+G +P
Sbjct: 162 KAPDSGDAKVDLGLKYGANP 181
Score = 50.4 bits (115), Expect = 1e-06
Identities = 34/89 (38%), Positives = 43/89 (48%)
Frame = +3
Query: 255 LLKLASVLGLDVAGVSFHVGSGAAEAAVFGRGVQLARSLFSAAXXXXXXXXXXXXXXXXX 434
LL+ A G+ VAGVSFHVGSGA+ A V+ ++ AR F AA
Sbjct: 187 LLRAAQREGVAVAGVSFHVGSGASRADVYRGAIEAAREAFDAA-AALGMPPMRVLDIGGG 245
Query: 435 XIAAHTHFMLEIAEVVNAALDSHFPSARC 521
+A T E A V+N AL+ HF C
Sbjct: 246 FMAGRT--FDEAAAVINRALERHFGDLPC 272
Score = 32.3 bits (70), Expect = 0.28
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +2
Query: 518 VRVVAEPGRYFAAAAYTLA 574
V V+ EPGRYFA A+TLA
Sbjct: 273 VEVIGEPGRYFAETAFTLA 291
>02_03_0240 - 16739628-16740369,16740392-16740978
Length = 442
Score = 72.1 bits (169), Expect = 3e-13
Identities = 36/79 (45%), Positives = 51/79 (64%), Gaps = 4/79 (5%)
Frame = +1
Query: 1 ELVTSLGVPPERIIFANPAKMASHIRYASAVGVDVMTFDSEIELMKIKQYMPHAQLLIRI 180
E V +LGV +R+++ANP K+ H+ YA+ VGVD+ TFDSE E+ KIK+ P +LL+RI
Sbjct: 119 EAVLALGVAADRVVYANPCKLEPHLEYAAGVGVDLTTFDSEEEVGKIKRCHPGCRLLLRI 178
Query: 181 RC----DAASAQCPLGIKF 225
+ D A LG K+
Sbjct: 179 KAPDGDDGGGAMLNLGTKW 197
Score = 31.9 bits (69), Expect = 0.38
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +2
Query: 518 VRVVAEPGRYFAAAAYTLA 574
V V+AEPGRYFA A+ LA
Sbjct: 292 VEVIAEPGRYFAETAFALA 310
>01_07_0333 -
42813789-42814073,42814229-42814315,42815083-42815172,
42815555-42815623,42815859-42815888,42816060-42816164,
42816454-42816549,42816647-42816760,42816862-42816955,
42817027-42817190
Length = 377
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +3
Query: 183 LRRGLGPVPARHQVRLRSRHGSSALLK 263
LR GL P RH++RLR S+A L+
Sbjct: 15 LRSGLAPFTLRHRLRLRRLRASAATLR 41
>05_07_0187 + 28267022-28267528
Length = 168
Score = 27.9 bits (59), Expect = 6.1
Identities = 20/59 (33%), Positives = 29/59 (49%)
Frame = -1
Query: 237 GIATELDAERALGRGRVAADADQQLRVRHVLLDLHQFNLRVEGHHVDPDGGRVTDVRRH 61
GIA E+D R + + D + RV +LL +++R G VD D G + VR H
Sbjct: 66 GIAAEVD--RVIDELVPSLLEDDENRVLMLLLKNAAWSIRNNGKLVDADAGGIFRVRMH 122
>01_07_0066 - 40855497-40855967,40856051-40856195,40856303-40856607
Length = 306
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 130 LMKIKQYMPHAQLLIRIRCDAASAQC 207
L K+K Y+ HA L +R + A +QC
Sbjct: 186 LRKLKAYVHHANLRVRAKAAVAMSQC 211
>11_02_0105 -
8336309-8336392,8336514-8336579,8337279-8337431,
8337511-8337633,8337989-8338075,8338832-8338984,
8339069-8339152,8339252-8339320,8339622-8339705,
8339836-8340052,8341034-8341239
Length = 441
Score = 27.5 bits (58), Expect = 8.1
Identities = 23/78 (29%), Positives = 33/78 (42%)
Frame = +3
Query: 144 AVHAARAVVDPHPLRRGLGPVPARHQVRLRSRHGSSALLKLASVLGLDVAGVSFHVGSGA 323
AV AA P P G+ PVP + + RH S + S + +AGV G
Sbjct: 42 AVVAAAGAAAPSPATGGVAPVPPSPRGSIIKRHTLSVFVGDESGMINRIAGVFARRGYNI 101
Query: 324 AEAAVFGRGVQLARSLFS 377
AV G+ ++LF+
Sbjct: 102 ESLAV---GLNKDKALFT 116
>03_03_0249 + 15832086-15833261
Length = 391
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Frame = -3
Query: 382 AAENSERAS-CTPRPNTAASAAPDPT 308
+A + RAS TP P++AA+AAP P+
Sbjct: 32 SAPTTPRASPATPSPSSAAAAAPSPS 57
>02_04_0520 - 23628183-23628195,23629354-23630036
Length = 231
Score = 27.5 bits (58), Expect = 8.1
Identities = 18/32 (56%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +3
Query: 246 SSALLKLASVLGLDVAGVSFH-VGSGAAEAAV 338
S A LK SVLG GV FH V +G A AAV
Sbjct: 18 SLADLKALSVLGRGARGVVFHVVPAGGAAAAV 49
>01_02_0107 - 11197013-11197244,11197384-11197514
Length = 120
Score = 27.5 bits (58), Expect = 8.1
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = -2
Query: 311 HVERHARHIESEYRGELQQRGASVTGSQPNLMPSGHWAEAASQRMRINNC 162
H+ER A +E E+R + RG S + P H A +S + R C
Sbjct: 3 HIERDADRVEVEHREVGEGRGDPPEKSGREVDPVKHEARRSSGQQRGRRC 52
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,361,811
Number of Sequences: 37544
Number of extensions: 254636
Number of successful extensions: 1353
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1349
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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