Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1173
         (576 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55059| Best HMM Match : Orn_Arg_deC_N (HMM E-Value=0)               53   2e-07
SB_11252| Best HMM Match : Orn_Arg_deC_N (HMM E-Value=5.5e-09)         51   6e-07
SB_42275| Best HMM Match : Orn_DAP_Arg_deC (HMM E-Value=0)             34   0.096
SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_42356| Best HMM Match : PDZ (HMM E-Value=5.7e-19)                   29   3.6  
SB_20133| Best HMM Match : Extensin_2 (HMM E-Value=2.1)                29   3.6  
SB_48895| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.8  
SB_16008| Best HMM Match : Orn_Arg_deC_N (HMM E-Value=6.6e-09)         27   8.3  

>SB_55059| Best HMM Match : Orn_Arg_deC_N (HMM E-Value=0)
          Length = 635

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 31/85 (36%), Positives = 40/85 (47%)
 Frame = +3

Query: 255 LLKLASVLGLDVAGVSFHVGSGAAEAAVFGRGVQLARSLFSAAXXXXXXXXXXXXXXXXX 434
           LLK+A  LGL+V GVSFHVGSG  +A+ +   V  ARS+F+ A                 
Sbjct: 358 LLKVAQDLGLNVVGVSFHVGSGCFDASAYATAVIAARSVFNLAVQFGFNCTLLDIGGGFP 417

Query: 435 XIAAHTHFMLEIAEVVNAALDSHFP 509
                     EI   +N  L+ HFP
Sbjct: 418 GDPNAAITFEEICTTINPLLEEHFP 442



 Score = 35.5 bits (78), Expect = 0.031
 Identities = 12/23 (52%), Positives = 20/23 (86%)
 Frame = +2

Query: 506 PERSVRVVAEPGRYFAAAAYTLA 574
           P   VR++AEPGRY++++++TLA
Sbjct: 443 PSSGVRIIAEPGRYYSSSSFTLA 465



 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = +1

Query: 82  ASAVGVDVMTFDSEIELMKIKQYMPHAQLLIRIRCDAASAQCPL 213
           AS   V + TFD+E+EL KIK+  P A   +++ C       PL
Sbjct: 266 ASKHDVAMTTFDNEMELHKIKKLYPDAH--VKVGCRRVDYYSPL 307



 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = +1

Query: 163 QLLIRIRCDAASAQCPLGIKFG 228
           +L++RIR D + + C LGIKFG
Sbjct: 328 RLILRIRTDDSKSLCQLGIKFG 349


>SB_11252| Best HMM Match : Orn_Arg_deC_N (HMM E-Value=5.5e-09)
          Length = 120

 Score = 51.2 bits (117), Expect = 6e-07
 Identities = 22/41 (53%), Positives = 31/41 (75%)
 Frame = +1

Query: 106 MTFDSEIELMKIKQYMPHAQLLIRIRCDAASAQCPLGIKFG 228
           MTFDSE+ELMK+ +  P+A+L++RI  D + A C L +KFG
Sbjct: 1   MTFDSEVELMKVARNHPNAKLVLRIATDDSKAVCRLSVKFG 41



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 19/43 (44%), Positives = 26/43 (60%)
 Frame = +3

Query: 246 SSALLKLASVLGLDVAGVSFHVGSGAAEAAVFGRGVQLARSLF 374
           S  LL+ A  L +D+ GVSFHVGSG  +   + + V  AR +F
Sbjct: 47  SRLLLERAKELNVDIIGVSFHVGSGCTDPQTYVQAVSDARCVF 89


>SB_42275| Best HMM Match : Orn_DAP_Arg_deC (HMM E-Value=0)
          Length = 210

 Score = 33.9 bits (74), Expect = 0.096
 Identities = 14/25 (56%), Positives = 20/25 (80%), Gaps = 1/25 (4%)
 Frame = +2

Query: 503 FP-ERSVRVVAEPGRYFAAAAYTLA 574
           FP +  V ++AEPGRY+ A+A+TLA
Sbjct: 13  FPVDSGVTIIAEPGRYYVASAFTLA 37


>SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3066

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -2

Query: 347  APEHRRLRRTRPHVERHARHIESEYRGELQQRGASVTGSQPNLMPSG 207
            A  +  L     H+ +  RHIE+    +   RG+++TGS     PSG
Sbjct: 2831 ATSYVELHSRLEHLNKACRHIEAIIAEKRSPRGSALTGSSRLRSPSG 2877


>SB_42356| Best HMM Match : PDZ (HMM E-Value=5.7e-19)
          Length = 619

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -1

Query: 516 ERSGNGYPAPRSPPP 472
           ER GNGYP   +PPP
Sbjct: 502 ERRGNGYPVDSAPPP 516


>SB_20133| Best HMM Match : Extensin_2 (HMM E-Value=2.1)
          Length = 762

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -2

Query: 356 LHAAPEHRRLRRTRPHVERHARHIESEYRGELQQRGASVTGSQ 228
           L + P +R +  TR    R A  I +E + ELQQ G   TG++
Sbjct: 164 LKSQPFNRTISITRDEQFREANSIINERQKELQQLGLDATGTR 206


>SB_48895| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 829

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +1

Query: 184 CDAASAQCPLGIKFGCDPVT 243
           CD+ S  C + I FGCDPVT
Sbjct: 255 CDSMSLGCDMKI-FGCDPVT 273


>SB_16008| Best HMM Match : Orn_Arg_deC_N (HMM E-Value=6.6e-09)
          Length = 314

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +1

Query: 16  LGVPPERIIFANPAKMASHIRYASAVGVDVMTFDSEIELMKIKQYM 153
           +G P ERI++ +P K    +++    GV  +  D+  EL  I + M
Sbjct: 69  VGFPAERIVYDSPVKTRPELKFLMEQGVH-LNVDNFQELQVITELM 113


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,678,133
Number of Sequences: 59808
Number of extensions: 216742
Number of successful extensions: 870
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)