Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1173
         (576 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64854-5|AAB18317.1|  422|Caenorhabditis elegans Hypothetical pr...    82   3e-16
U03059-1|AAA88795.1|  422|Caenorhabditis elegans ornithine decar...    82   3e-16
U55366-4|AAA97982.1|  310|Caenorhabditis elegans Collagen protei...    29   3.1  
AC006709-1|AAF60432.2|  256|Caenorhabditis elegans Hypothetical ...    27   9.5  

>U64854-5|AAB18317.1|  422|Caenorhabditis elegans Hypothetical
           protein K11C4.4 protein.
          Length = 422

 Score = 81.8 bits (193), Expect = 3e-16
 Identities = 38/85 (44%), Positives = 55/85 (64%)
 Frame = +1

Query: 1   ELVTSLGVPPERIIFANPAKMASHIRYASAVGVDVMTFDSEIELMKIKQYMPHAQLLIRI 180
           ++V   GV  ERII+ANP K  S I +A    V +MTFD+  EL+KI +  P+A++++RI
Sbjct: 98  DIVMGTGVSAERIIYANPCKTRSFIAHAMDRDVKMMTFDNPEELLKIAKLHPNAEMILRI 157

Query: 181 RCDAASAQCPLGIKFGCDPVTEAPR 255
                +A CPL +KFG DP+  AP+
Sbjct: 158 AVSDPTATCPLNLKFGADPIIAAPQ 182



 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 31/96 (32%), Positives = 42/96 (43%)
 Frame = +3

Query: 255 LLKLASVLGLDVAGVSFHVGSGAAEAAVFGRGVQLARSLFSAAXXXXXXXXXXXXXXXXX 434
           LLK AS  G++V G+SFHVGSG  +A+ +   +Q A++L                     
Sbjct: 183 LLKTASEEGINVVGISFHVGSGCNDASAYRNALQHAKNLCEIGEGLGFKMDIIDMGGGFP 242

Query: 435 XIAAHTHFMLEIAEVVNAALDSHFPSARCAW*PSPG 542
               H  F  +IAE +  ALD  FP         PG
Sbjct: 243 GAEHHNPFE-KIAETIRDALDEFFPDTNKRLIAEPG 277



 Score = 33.5 bits (73), Expect = 0.11
 Identities = 12/23 (52%), Positives = 19/23 (82%)
 Frame = +2

Query: 503 FPERSVRVVAEPGRYFAAAAYTL 571
           FP+ + R++AEPGR+FAA  ++L
Sbjct: 265 FPDTNKRLIAEPGRFFAAGPFSL 287


>U03059-1|AAA88795.1|  422|Caenorhabditis elegans ornithine
           decarboxylase protein.
          Length = 422

 Score = 81.8 bits (193), Expect = 3e-16
 Identities = 38/85 (44%), Positives = 55/85 (64%)
 Frame = +1

Query: 1   ELVTSLGVPPERIIFANPAKMASHIRYASAVGVDVMTFDSEIELMKIKQYMPHAQLLIRI 180
           ++V   GV  ERII+ANP K  S I +A    V +MTFD+  EL+KI +  P+A++++RI
Sbjct: 98  DIVMGTGVSAERIIYANPCKTRSFIAHAMDRDVKMMTFDNPEELLKIAKLHPNAEMILRI 157

Query: 181 RCDAASAQCPLGIKFGCDPVTEAPR 255
                +A CPL +KFG DP+  AP+
Sbjct: 158 AVSDPTATCPLNLKFGADPIIAAPQ 182



 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 31/96 (32%), Positives = 42/96 (43%)
 Frame = +3

Query: 255 LLKLASVLGLDVAGVSFHVGSGAAEAAVFGRGVQLARSLFSAAXXXXXXXXXXXXXXXXX 434
           LLK AS  G++V G+SFHVGSG  +A+ +   +Q A++L                     
Sbjct: 183 LLKTASEEGINVVGISFHVGSGCNDASAYRNALQHAKNLCEIGEGLGFKMDIIDMGGGFP 242

Query: 435 XIAAHTHFMLEIAEVVNAALDSHFPSARCAW*PSPG 542
               H  F  +IAE +  ALD  FP         PG
Sbjct: 243 GAEHHNPFE-KIAETIRDALDEFFPDTNKRLYREPG 277



 Score = 29.9 bits (64), Expect = 1.4
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +2

Query: 503 FPERSVRVVAEPGRYFAAAAYTL 571
           FP+ + R+  EPGR+FAA  ++L
Sbjct: 265 FPDTNKRLYREPGRFFAAGPFSL 287


>U55366-4|AAA97982.1|  310|Caenorhabditis elegans Collagen protein
           139 protein.
          Length = 310

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -1

Query: 543 RPGSATTRTERSG-NGYPAPRSPPPQS 466
           +PGS+++   + G NG P PR PP Q+
Sbjct: 216 QPGSSSSEPGQPGPNGQPGPRGPPGQA 242


>AC006709-1|AAF60432.2|  256|Caenorhabditis elegans Hypothetical
           protein Y119C1A.1 protein.
          Length = 256

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 513 RSGNGYPAPRSPPPQSLA 460
           +S  G P PR PPP+S++
Sbjct: 185 KSAKGVPPPRPPPPRSIS 202


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,708,302
Number of Sequences: 27780
Number of extensions: 160912
Number of successful extensions: 695
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)