Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1173
         (576 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    25   0.71 
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   2.2  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   8.7  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 24.6 bits (51), Expect = 0.71
 Identities = 23/85 (27%), Positives = 29/85 (34%)
 Frame = -2

Query: 356 LHAAPEHRRLRRTRPHVERHARHIESEYRGELQQRGASVTGSQPNLMPSGHWAEAASQRM 177
           +HA P H       PH +       S Y   +Q          P   P G   E   Q  
Sbjct: 426 IHATPHHHHSHAATPHHQHSTPLAHSSYPAAIQIGHTPHHHPHPPETP-GPQVETILQ-- 482

Query: 176 RINNCACGMYCLIFISSISESKVIT 102
             N C C    L+ I  + E K+IT
Sbjct: 483 --NACFCARNELMMI--LKEIKIIT 503


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +3

Query: 486 AALDSHFPSARCAW*PSPGATS 551
           AAL + FPS  CA  PS  A S
Sbjct: 340 AALFAKFPSLACAAEPSSDAVS 361


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -2

Query: 227 PNLMPSGHWAEAAS 186
           PN   SGHW +  S
Sbjct: 233 PNFPSSGHWQDQMS 246


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,147
Number of Sequences: 438
Number of extensions: 1805
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)