Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1173
         (576 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g46890.1 68416.m05089 expressed protein hypothetical protein ...    27   6.8  
At2g27150.1 68415.m03263 aldehyde oxidase 3 (AAO3) identical to ...    27   6.8  
At3g55590.1 68416.m06173 GDP-mannose pyrophosphorylase, putative...    27   9.0  
At1g58390.1 68414.m06643 disease resistance protein (CC-NBS-LRR ...    27   9.0  

>At3g46890.1 68416.m05089 expressed protein hypothetical protein
           F2I9.20 - Arabidopsis thaliana,PID:g3785987
          Length = 204

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
 Frame = +3

Query: 183 LRRGLGPVPARHQVRLRSRHGSSALLKLASVLGLDVAG-VSFHVGSGAAE-----AAVFG 344
           LRR L P    H   +      ++L  LA  LGL  +G ++F V S A+E       +  
Sbjct: 11  LRRRLLPTTLIHVTAIDGIVNVNSLFSLALFLGLTTSGNITFPVSSSASENHHLRRCISA 70

Query: 345 RGVQLARSLFSA 380
           +G  LA  L S+
Sbjct: 71  KGPALAERLVSS 82


>At2g27150.1 68415.m03263 aldehyde oxidase 3 (AAO3) identical to
            GP:3172044:gnl:PID:d1029570:AB010080
          Length = 1332

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +3

Query: 186  RRGLGPVPARHQVRLRSRHGSSALLKLASVLGLDVAGVSFHVG 314
            +RG+  VP  HQV  R   G  ++L   SV+ ++V G+    G
Sbjct: 1000 KRGISRVPIVHQVMQRPTPGKVSILSDGSVV-VEVGGIEIGQG 1041


>At3g55590.1 68416.m06173 GDP-mannose pyrophosphorylase, putative
           strong similarity to GDP-mannose pyrophosphorylase from
           Arabidopsis thaliana [GI:3598958], Pichia angusta
           [GI:7331158]; contains Pfam profile PF00483 Nucleotidyl
           transferase
          Length = 364

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 23/78 (29%), Positives = 34/78 (43%)
 Frame = +1

Query: 13  SLGVPPERIIFANPAKMASHIRYASAVGVDVMTFDSEIELMKIKQYMPHAQLLIRIRCDA 192
           +L +P   + FAN   +   I    A+GVD        E++    Y P  QLL+  +  +
Sbjct: 18  TLSLPKPLVDFANKPMILHQIEALKAIGVD--------EVVLAINYEPE-QLLVMSKF-S 67

Query: 193 ASAQCPLGIKFGCDPVTE 246
              +  LGIK  C   TE
Sbjct: 68  NDVEATLGIKITCSQETE 85


>At1g58390.1 68414.m06643 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 907

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = -1

Query: 162 RVRHVLLDLHQFNLR---VEGHHVDPDGGRVTDVRRHFSR 52
           R+  V+ D+  F ++   V+G ++ P G R  ++R+ FS+
Sbjct: 118 RISDVIRDMQSFGVQQAIVDGGYMQPQGDRQREMRQTFSK 157


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,259,860
Number of Sequences: 28952
Number of extensions: 152814
Number of successful extensions: 674
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)