Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1172X
(502 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ518940-1|CAD57734.1| 361|Tribolium castaneum extradenticle pr... 24 0.88
AF321227-6|AAK16426.1| 150|Tribolium castaneum Pb protein. 23 2.0
AY887136-1|AAW78361.1| 580|Tribolium castaneum vasa RNA helicas... 22 2.7
X72339-1|CAA51066.1| 133|Tribolium castaneum abdominal protein. 22 3.6
AF017415-2|AAB70263.1| 284|Tribolium castaneum abdominal-A prot... 22 3.6
AF017415-1|AAB70262.1| 343|Tribolium castaneum abdominal-AII pr... 22 3.6
AY074761-1|AAL71874.1| 314|Tribolium castaneum ultrabithorax pr... 21 4.7
AF187068-1|AAF03888.1| 477|Tribolium castaneum proboscipedia or... 21 4.7
AY043292-1|AAK96031.1| 323|Tribolium castaneum homeodomain tran... 21 6.2
AF228509-1|AAF69136.1| 325|Tribolium castaneum prothoraxless pr... 21 6.2
DQ659248-1|ABG47446.1| 496|Tribolium castaneum chitinase 8 prot... 21 8.2
>AJ518940-1|CAD57734.1| 361|Tribolium castaneum extradenticle
protein.
Length = 361
Score = 23.8 bits (49), Expect = 0.88
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +2
Query: 2 PITTVPTTTRHAPPMQDSMDLSVGS 76
P + PT P QDSM S+GS
Sbjct: 312 PYSGTPTPMMSPAPPQDSMGYSMGS 336
>AF321227-6|AAK16426.1| 150|Tribolium castaneum Pb protein.
Length = 150
Score = 22.6 bits (46), Expect = 2.0
Identities = 14/61 (22%), Positives = 22/61 (36%)
Frame = -1
Query: 307 PPTHAPPSLPHRLAIPKASLPXXXXXXXXGVAARLLKQPALVTEDMRARTGLSTRVSVWR 128
PP P +PH + P ++P + +Q + R G +T WR
Sbjct: 93 PPAGYPMDVPHGMGSPGVNVPEYPWMKEKKTTRKSSQQGNF---EFRNTVGATTANIFWR 149
Query: 127 L 125
L
Sbjct: 150 L 150
>AY887136-1|AAW78361.1| 580|Tribolium castaneum vasa RNA helicase
protein.
Length = 580
Score = 22.2 bits (45), Expect = 2.7
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = +2
Query: 272 PVWEGWRSVGGGQDTRGSR 328
P W G +S GG D G R
Sbjct: 537 PEWLGSKSYGGSADQFGGR 555
>X72339-1|CAA51066.1| 133|Tribolium castaneum abdominal protein.
Length = 133
Score = 21.8 bits (44), Expect = 3.6
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 32 HAPPMQDSMDLSVGSDSL 85
H PM+ S+D S GSD L
Sbjct: 108 HHDPMKMSLDKSGGSDLL 125
>AF017415-2|AAB70263.1| 284|Tribolium castaneum abdominal-A
protein.
Length = 284
Score = 21.8 bits (44), Expect = 3.6
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 32 HAPPMQDSMDLSVGSDSL 85
H PM+ S+D S GSD L
Sbjct: 259 HHDPMKMSLDKSGGSDLL 276
>AF017415-1|AAB70262.1| 343|Tribolium castaneum abdominal-AII
protein.
Length = 343
Score = 21.8 bits (44), Expect = 3.6
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 32 HAPPMQDSMDLSVGSDSL 85
H PM+ S+D S GSD L
Sbjct: 318 HHDPMKMSLDKSGGSDLL 335
>AY074761-1|AAL71874.1| 314|Tribolium castaneum ultrabithorax
protein.
Length = 314
Score = 21.4 bits (43), Expect = 4.7
Identities = 11/30 (36%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Frame = +2
Query: 269 KPVWEGWRSVGGGQDTRGSRGP-SPTCAAP 355
K VW+ S GG T GP P P
Sbjct: 117 KDVWQSATSGGGANLTNSLTGPVRPAACTP 146
>AF187068-1|AAF03888.1| 477|Tribolium castaneum proboscipedia
ortholog protein.
Length = 477
Score = 21.4 bits (43), Expect = 4.7
Identities = 7/21 (33%), Positives = 11/21 (52%)
Frame = -1
Query: 307 PPTHAPPSLPHRLAIPKASLP 245
PP P +PH + P ++P
Sbjct: 93 PPAGYPMDVPHGMGSPGVNVP 113
>AY043292-1|AAK96031.1| 323|Tribolium castaneum homeodomain
transcription factor Prothoraxlessprotein.
Length = 323
Score = 21.0 bits (42), Expect = 6.2
Identities = 10/29 (34%), Positives = 11/29 (37%)
Frame = +2
Query: 128 PPHRYTGTESGPSSHIFSHKGGLLQEPSG 214
P R G S H H G +Q P G
Sbjct: 11 PDMRNGGVVSAEHPHQHQHYGAAVQVPQG 39
>AF228509-1|AAF69136.1| 325|Tribolium castaneum prothoraxless
protein.
Length = 325
Score = 21.0 bits (42), Expect = 6.2
Identities = 10/29 (34%), Positives = 11/29 (37%)
Frame = +2
Query: 128 PPHRYTGTESGPSSHIFSHKGGLLQEPSG 214
P R G S H H G +Q P G
Sbjct: 11 PDMRNGGVVSAEHPHQHQHYGAAVQVPQG 39
>DQ659248-1|ABG47446.1| 496|Tribolium castaneum chitinase 8
protein.
Length = 496
Score = 20.6 bits (41), Expect = 8.2
Identities = 11/36 (30%), Positives = 16/36 (44%)
Frame = +2
Query: 104 PHRLTQAQPPHRYTGTESGPSSHIFSHKGGLLQEPS 211
P + Q P ESG S K G++++PS
Sbjct: 418 PTESSTTQKPQTTKTPESGNESDGVCTKEGIVRDPS 453
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,171
Number of Sequences: 336
Number of extensions: 2472
Number of successful extensions: 13
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11839801
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
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