Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1172X
         (502 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    27   1.2  
SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|...    25   4.8  
SPCC895.03c |||SUA5/yciO/yrdC family|Schizosaccharomyces pombe|c...    25   8.4  

>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +1

Query: 337 PDLRRAWPVPQQRQDTEMQMYMPAKTMPEVPIVYSSQQQT 456
           P L+R  P+    Q  + Q+ +P +  P +P+    QQQ+
Sbjct: 134 PQLQRMMPILSSNQPIQ-QLPLPNQASPYIPVPLQQQQQS 172


>SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 539

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = +1

Query: 358 PVPQQRQDTEMQMYMPAKTMPEVPIVYSSQQQT 456
           P+PQ+R  T ++   P    P   + Y + ++T
Sbjct: 40  PIPQERPTTSLRKPTPRVQRPATDVSYGALEET 72


>SPCC895.03c |||SUA5/yciO/yrdC family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 408

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -2

Query: 411 LSRHIHLHLR-VLSLLRNGPGAAQVGLGPREPRVSCPPPTLLHPSHTGL 268
           L++H++  L+  + L+ +G GA  VG+        C PP +L P    L
Sbjct: 204 LAKHVYNDLQGKIPLILDG-GACGVGVESTVVNGLCDPPVILRPGGISL 251


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,909,216
Number of Sequences: 5004
Number of extensions: 35767
Number of successful extensions: 95
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)