Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1172X
(502 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0184 - 1298640-1298751,1298936-1299027,1299695-1299910,130... 31 0.39
05_01_0182 + 1284900-1285469,1285604-1286612,1286698-1287107 31 0.39
01_01_0657 + 5015435-5016292,5016352-5016657 31 0.39
01_06_0207 + 27534226-27534723 29 1.6
07_01_1037 - 9026198-9026586,9026773-9026937,9027010-9027096,902... 29 2.8
06_03_1298 + 29141578-29141623,29142129-29142250,29143818-291438... 29 2.8
01_05_0602 + 23577328-23579805 29 2.8
10_06_0002 + 9382559-9382937,9383008-9383180,9386752-9386901,938... 28 3.7
10_01_0296 + 3069605-3070535,3071127-3071294,3075307-3076454 28 3.7
12_02_0846 - 23623624-23623784,23624076-23624258,23624601-236246... 28 4.8
12_02_0845 - 23618118-23618278,23618570-23618723 28 4.8
11_06_0273 - 21810317-21810535,21810673-21810740,21810879-21810960 28 4.8
06_02_0206 + 13005863-13005966,13006918-13007080,13008534-130086... 28 4.8
05_01_0121 - 833885-833949,834180-834430,834545-834604,834893-83... 28 4.8
03_02_0554 - 9426195-9426674,9427163-9427252,9428143-9428934 28 4.8
01_06_0887 + 32733300-32734565 28 4.8
01_05_0805 - 25381367-25381398,25382373-25382892 28 4.8
01_01_0522 - 3834551-3835451,3835992-3836572 28 4.8
03_05_0001 - 19386264-19386284,19386446-19386517,19386614-193873... 27 6.4
03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015 27 6.4
01_07_0239 + 42222024-42222133,42222220-42222301,42222396-422224... 27 6.4
11_01_0625 + 5030571-5031016,5031333-5031627 27 8.5
09_06_0099 - 20854828-20855117,20855231-20855423,20855507-208556... 27 8.5
08_01_0955 + 9478018-9478773 27 8.5
04_04_0312 + 24314940-24315143,24316074-24316253,24316801-243170... 27 8.5
02_04_0371 + 22434710-22435102,22435428-22435624,22435707-224358... 27 8.5
>05_01_0184 -
1298640-1298751,1298936-1299027,1299695-1299910,
1300045-1300614
Length = 329
Score = 31.5 bits (68), Expect = 0.39
Identities = 19/49 (38%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Frame = -2
Query: 357 PGAAQVGLGPREPRVS-CPPPTLLHPSHTGLRSPRRRCQGGS-KAGNWA 217
P A G P +S PPP PS L+ P C GG KA WA
Sbjct: 49 PPAPATGPPQGTPAMSLAPPPPKASPSAARLQKPAASCHGGQPKASPWA 97
>05_01_0182 + 1284900-1285469,1285604-1286612,1286698-1287107
Length = 662
Score = 31.5 bits (68), Expect = 0.39
Identities = 19/49 (38%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Frame = -2
Query: 357 PGAAQVGLGPREPRVS-CPPPTLLHPSHTGLRSPRRRCQGGS-KAGNWA 217
P A G P +S PPP PS L+ P C GG KA WA
Sbjct: 49 PPAPATGPPQGTPAMSLAPPPPKASPSAARLQKPAASCHGGQPKASPWA 97
>01_01_0657 + 5015435-5016292,5016352-5016657
Length = 387
Score = 31.5 bits (68), Expect = 0.39
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Frame = +2
Query: 5 ITTVPTTTRHAPPMQDSMDLSVGSDSLVDGDRWPHRLTQAQPPHRYTGTESGPSSH--IF 178
+ TTT A P +M L + + D +R P + QA+PP + E +S+ +F
Sbjct: 122 VAAAATTTPQAAPEIQTMSLQPAAVAGFDPERIPKSIFQAKPPGSSSQAEWSVASNESLF 181
Query: 179 S-HKGGLLQEPSGD 217
S H G PSGD
Sbjct: 182 SIHHGA---RPSGD 192
>01_06_0207 + 27534226-27534723
Length = 165
Score = 29.5 bits (63), Expect = 1.6
Identities = 24/76 (31%), Positives = 28/76 (36%)
Frame = +2
Query: 110 RLTQAQPPHRYTGTESGPSSHIFSHKGGLLQEPSGDAQFPAFEPPWQRRLGDRKPVWEGW 289
R + QPP R G + GPS H G L + A W+RR R
Sbjct: 5 RFGERQPPRRLLGDDGGPS----VHGDGFLATAAAAAS--TARASWRRRRPQRPR--RLL 56
Query: 290 RSVGGGQDTRGSRGPS 337
GGG G GPS
Sbjct: 57 LGDGGGPSVHGGGGPS 72
>07_01_1037 -
9026198-9026586,9026773-9026937,9027010-9027096,
9027173-9027245,9027947-9028012,9028096-9028194,
9028710-9028772,9028959-9029345
Length = 442
Score = 28.7 bits (61), Expect = 2.8
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = -2
Query: 369 LRNGPGAAQVGLGPREPRVSCPPPTLLHPSHTGLRSPRRRCQGGSKA 229
LR GP ++ L P P P +L + GLRSP G A
Sbjct: 35 LRRGPASSPSRLRPPRPDDPAPAASLSQGAARGLRSPPHLASSGPAA 81
>06_03_1298 +
29141578-29141623,29142129-29142250,29143818-29143874,
29143983-29144138,29144220-29144304,29144575-29144665,
29144807-29144971,29145064-29145186,29145334-29145409,
29145513-29145642,29145951-29147824,29148339-29148529,
29148697-29148860,29149164-29149275,29149276-29149294
Length = 1136
Score = 28.7 bits (61), Expect = 2.8
Identities = 16/67 (23%), Positives = 26/67 (38%)
Frame = +2
Query: 5 ITTVPTTTRHAPPMQDSMDLSVGSDSLVDGDRWPHRLTQAQPPHRYTGTESGPSSHIFSH 184
+T P + +P + ++ SV + L + PP Y T S +S S
Sbjct: 777 VTATPRMMKDSPKLNHNVKQSVVASKLANAGTGSQNYVNNPPPTDYLETASSATSVWLSQ 836
Query: 185 KGGLLQE 205
GLL +
Sbjct: 837 NDGLLHQ 843
>01_05_0602 + 23577328-23579805
Length = 825
Score = 28.7 bits (61), Expect = 2.8
Identities = 22/72 (30%), Positives = 28/72 (38%), Gaps = 2/72 (2%)
Frame = -1
Query: 310 LPPTHAPPSLPHRLAI--PKASLPXXXXXXXXGVAARLLKQPALVTEDMRARTGLSTRVS 137
LPP+ PP LP RLA P A P + A L+ A + A L +
Sbjct: 22 LPPSPPPPPLPSRLAAAHPSAPSPSPRDDERLRLRAEELRSYAAALQGCAASRALRRGKA 81
Query: 136 VWRLSLRQPVRP 101
+ LR RP
Sbjct: 82 LHARLLRSGPRP 93
>10_06_0002 +
9382559-9382937,9383008-9383180,9386752-9386901,
9387180-9387325,9387416-9387572,9387720-9387778,
9388204-9388360,9389001-9389150,9389280-9389416,
9390071-9390217,9390292-9390393,9390742-9390799,
9391997-9392034,9392124-9392250,9392320-9392493,
9393125-9393256,9393940-9394049,9394752-9394812,
9395036-9395213,9395326-9395531,9395796-9395915,
9396496-9396594,9396983-9397204,9397482-9397621,
9397741-9397852,9398021-9398071,9398151-9398240,
9398397-9398567,9398663-9398815,9399774-9399950,
9400045-9400182,9400295-9400365,9400739-9400838,
9401324-9401380,9401469-9401525,9401619-9401699,
9401782-9401864,9401975-9402110
Length = 1632
Score = 28.3 bits (60), Expect = 3.7
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = +2
Query: 254 RLGDRKPVWEGWRSVGGGQDTRGSRGPSPTCAAPG 358
R G+ WEG RS GGG+ RG T A PG
Sbjct: 79 RAGEGPGGWEGRRS-GGGRAPARRRGGGETRAVPG 112
>10_01_0296 + 3069605-3070535,3071127-3071294,3075307-3076454
Length = 748
Score = 28.3 bits (60), Expect = 3.7
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +2
Query: 248 QRRLGDRKPVWEGWRSVGGGQDTRGSRGPSP 340
Q+ L KPVW W GG + S P+P
Sbjct: 233 QKDLNRTKPVWLDWAIRDGGNSSASSSCPAP 263
>12_02_0846 -
23623624-23623784,23624076-23624258,23624601-23624641,
23624746-23624910,23625808-23625885,23626024-23626169
Length = 257
Score = 27.9 bits (59), Expect = 4.8
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +2
Query: 182 HKGGLLQEPSGDAQFPAFEPP 244
H GGLL P G Q PA PP
Sbjct: 217 HTGGLLGTPQGRLQDPALGPP 237
>12_02_0845 - 23618118-23618278,23618570-23618723
Length = 104
Score = 27.9 bits (59), Expect = 4.8
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +2
Query: 182 HKGGLLQEPSGDAQFPAFEPP 244
H GGLL P G Q PA PP
Sbjct: 64 HTGGLLGTPQGRLQDPALGPP 84
>11_06_0273 - 21810317-21810535,21810673-21810740,21810879-21810960
Length = 122
Score = 27.9 bits (59), Expect = 4.8
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = +2
Query: 260 GDRKPVWEGWRSVGGGQDTRGSRGPSPTCAAPGPFRS 370
G R+P W W S RG +P+ AA RS
Sbjct: 61 GTRRPSWSSWSSTASRSSPPPGRG-APSAAAAAELRS 96
>06_02_0206 +
13005863-13005966,13006918-13007080,13008534-13008632,
13008704-13008817,13009094-13009254,13009746-13009827,
13009972-13010057,13011563-13011742,13011913-13012424,
13012844-13013478
Length = 711
Score = 27.9 bits (59), Expect = 4.8
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1
Query: 298 GWGAGYPRLAWPEPDLRRAWPVPQQRQDTEMQMYMPAKTMP 420
G A YP+ +L RA V QR D+ + +Y P +T P
Sbjct: 144 GSRARYPQYYVAYQELLRAGAVFPQRPDSSVPIYTPPQTQP 184
>05_01_0121 -
833885-833949,834180-834430,834545-834604,834893-834926,
835746-835805,836409-836509,836939-837039,837209-837289,
837580-837650,837738-837849,838138-838173,838865-838951,
839055-839396
Length = 466
Score = 27.9 bits (59), Expect = 4.8
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +1
Query: 301 WGAGYPRLAWPEPDLR 348
WG GYP+L WP P R
Sbjct: 277 WGKGYPKL-WPSPKCR 291
>03_02_0554 - 9426195-9426674,9427163-9427252,9428143-9428934
Length = 453
Score = 27.9 bits (59), Expect = 4.8
Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 5/71 (7%)
Frame = +2
Query: 92 GDRWPHRLTQAQPPHRYTGTESGPSSHIFSHKGGLLQEPSG-----DAQFPAFEPPWQRR 256
GD W R ++P HR+ +G + SH G S D EP +R+
Sbjct: 349 GDDWQRREQGSEPYHRFERETNGNGWNSSSHDGSSKNYNSNSWDDWDEPVKKDEPAKERQ 408
Query: 257 LGDRKPVWEGW 289
D W GW
Sbjct: 409 SSDS---WAGW 416
>01_06_0887 + 32733300-32734565
Length = 421
Score = 27.9 bits (59), Expect = 4.8
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -1
Query: 310 LPPTHAPPSLPHRLAIPKASLP 245
LPP H PP LP+ L +P A P
Sbjct: 45 LPPLHPPPKLPY-LILPLAEQP 65
>01_05_0805 - 25381367-25381398,25382373-25382892
Length = 183
Score = 27.9 bits (59), Expect = 4.8
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Frame = +2
Query: 251 RRLGDRKPVWEGWRSVGGGQDTRGSRGPSP-----TCAAPGPFRSSDK 379
RR GD K GW++ GG + + G+R +P +APG R S K
Sbjct: 77 RRFGDGK----GWKADGGTRPSGGARRVTPRRRGVEASAPGKMRGSAK 120
>01_01_0522 - 3834551-3835451,3835992-3836572
Length = 493
Score = 27.9 bits (59), Expect = 4.8
Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Frame = -2
Query: 420 GHCLSRHIHLHLR---VLSLLRNGPGAAQVGLGPREPRVSCPPPTL 292
GH + L L+ V LLR AA G P P SC PPT+
Sbjct: 228 GHIMLSDFDLSLKCDVVPKLLRPARSAAAGGKPPLPPPSSCVPPTI 273
>03_05_0001 - 19386264-19386284,19386446-19386517,19386614-19387357,
19387454-19388884,19388953-19389118,19392035-19392114,
19392393-19392462,19392550-19392761,19392837-19392890,
19393471-19393623,19393715-19393930,19394029-19394248,
19394332-19394399,19394510-19394643,19394755-19394854,
19394943-19395421,19395506-19395699,19396270-19396355,
19396364-19396444,19396842-19397023,19397305-19397346,
19398247-19398558,19399374-19399434,19399435-19399617,
19399744-19399863,19400380-19401051,19402597-19402668,
19402742-19402865,19403563-19403651,19405023-19405097
Length = 2170
Score = 27.5 bits (58), Expect = 6.4
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = -2
Query: 393 LHLRVLSLLRNGPGAAQVGLGPREPRVSCPPPTLLHPSHT 274
L +++ S L Q L +PR PPP HPS T
Sbjct: 2025 LQIQLSSGLAQSVSNPQPSLSSMQPRAPPPPPPQPHPSQT 2064
>03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015
Length = 327
Score = 27.5 bits (58), Expect = 6.4
Identities = 13/54 (24%), Positives = 24/54 (44%)
Frame = +1
Query: 316 PRLAWPEPDLRRAWPVPQQRQDTEMQMYMPAKTMPEVPIVYSSQQQTLRDGPKK 477
PR + ++R W V + ++ M+ MP + EV ++ +R KK
Sbjct: 122 PRRSLATGEVRMPWDVMEDDKEVRMRFDMPGLSREEVKVMVEDDALVIRGEHKK 175
>01_07_0239 +
42222024-42222133,42222220-42222301,42222396-42222486,
42222702-42222814,42222912-42222984,42223080-42223178,
42223201-42223406,42223693-42223832,42223912-42223969,
42224067-42224137,42224207-42224741
Length = 525
Score = 27.5 bits (58), Expect = 6.4
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +2
Query: 104 PHRLTQAQPPHRYTGTESGPSSHIFSHKGGLLQEPSGDAQFP 229
PH++ QP H +GPS H +G P G ++P
Sbjct: 397 PHQIRPGQPMHNAPPVAAGPSHHYAKPRG-----PGGPNRYP 433
>11_01_0625 + 5030571-5031016,5031333-5031627
Length = 246
Score = 27.1 bits (57), Expect = 8.5
Identities = 17/52 (32%), Positives = 21/52 (40%)
Frame = -2
Query: 432 YRHLGHCLSRHIHLHLRVLSLLRNGPGAAQVGLGPREPRVSCPPPTLLHPSH 277
YR G C R L ++ + P A L P P S PP + PSH
Sbjct: 62 YRFQGRC--RQAPALLGTVAATEDAPAAVTWTLPPLPPCPSLPPTSWTFPSH 111
>09_06_0099 -
20854828-20855117,20855231-20855423,20855507-20855668,
20856384-20856497
Length = 252
Score = 27.1 bits (57), Expect = 8.5
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -2
Query: 330 PREPRVSCPPPTLLHPSHT 274
P P +SCP L HP HT
Sbjct: 214 PVLPNLSCPAEVLFHPFHT 232
>08_01_0955 + 9478018-9478773
Length = 251
Score = 27.1 bits (57), Expect = 8.5
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 316 PRLAWPEPDLRRAWPVPQQRQDTEMQMYMPAKTMPEV 426
PR P RRA P P ++T+ +MY+ K + E+
Sbjct: 110 PRCRCPSR-CRRAAPPPSSSKNTDQRMYLHVKCIKEI 145
>04_04_0312 +
24314940-24315143,24316074-24316253,24316801-24317030,
24317205-24317375,24317685-24317790,24318099-24318305,
24318646-24318806,24319001-24319103
Length = 453
Score = 27.1 bits (57), Expect = 8.5
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +2
Query: 278 WEGWRSVGGGQDTRGSRGPSP 340
W+GW GQ +G + PSP
Sbjct: 386 WDGWLYFTSGQRDKGPKDPSP 406
>02_04_0371 +
22434710-22435102,22435428-22435624,22435707-22435824,
22436458-22436574,22436702-22436803,22437431-22437487,
22437976-22438044,22438423-22438533,22438597-22438791,
22439023-22439121,22439656-22440222,22440344-22440568,
22441036-22441338,22441640-22441707,22441947-22442105,
22442230-22442475,22442549-22442680,22443243-22443351,
22444131-22444283,22444359-22444601,22444695-22444862,
22445013-22445156,22445238-22445699,22446495-22446791,
22446867-22447024,22447139-22447246,22447474-22447732
Length = 1752
Score = 27.1 bits (57), Expect = 8.5
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = -2
Query: 306 PPPTLLHPSHTGLRSPRRRCQGGSKAG 226
PPP LL P L RRRC G G
Sbjct: 29 PPPPLLSPRRPLLAPRRRRCLCGGGGG 55
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,175,417
Number of Sequences: 37544
Number of extensions: 396170
Number of successful extensions: 2111
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2106
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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