Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1172X
         (502 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50573| Best HMM Match : WH1 (HMM E-Value=0.0015)                    29   2.8  
SB_43189| Best HMM Match : PGAMP (HMM E-Value=2.1)                     29   2.8  
SB_6406| Best HMM Match : Mis12 (HMM E-Value=0.49)                     28   3.8  
SB_6278| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.0  
SB_18417| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_55214| Best HMM Match : DUF1665 (HMM E-Value=3)                     27   6.6  
SB_47601| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_1363| Best HMM Match : Chorion_3 (HMM E-Value=2.9)                  27   6.6  
SB_32581| Best HMM Match : DUF1017 (HMM E-Value=8.4)                   27   8.7  
SB_47534| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_22845| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_3733| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.7  

>SB_50573| Best HMM Match : WH1 (HMM E-Value=0.0015)
          Length = 554

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 2/82 (2%)
 Frame = -2

Query: 486 LQALLRSVAESLLLTRVHYRHLGHCLSRHIHLHLRVLSLLRNGPGA--AQVGLGPREPRV 313
           L AL+     S   TRV Y       S  +   +R   + R GP A  ++V  GP+   +
Sbjct: 339 LAALVYRTGPSARYTRVTYGPKCALFSCTVRAQVRAALVYRTGPSARCSRVPYGPKRALL 398

Query: 312 SCPPPTLLHPSHTGLRSPRRRC 247
           SC     +  +      P  RC
Sbjct: 399 SCTVRAQVRAALVYRTGPSARC 420


>SB_43189| Best HMM Match : PGAMP (HMM E-Value=2.1)
          Length = 461

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = +2

Query: 23  TTRHAPPMQDSMDLSVG--SDSLVDGDRWPHRLTQAQPPHRYTGTES 157
           T RH      S  LS    + SL  G +  H L  AQ PH +TGT+S
Sbjct: 121 TVRHPHTGTKSPMLSTHGTTPSLAHGYQVKHALRTAQHPHSHTGTKS 167


>SB_6406| Best HMM Match : Mis12 (HMM E-Value=0.49)
          Length = 714

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = -1

Query: 199 KQPALVTEDMRARTGLSTRVS-VWRLSLRQPVRPP 98
           +   L T +   R  LS R   VWRL L QPV PP
Sbjct: 506 RSEGLPTSERAPRHYLSKRQPPVWRLDLAQPVGPP 540


>SB_6278| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 367

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = +2

Query: 200 QEPSGDAQFPAFEPPWQRRLGDRKPVWEGWRSVGGGQDTRGSRGPSPTC-AAPGPFRSSD 376
           +E S    +  F  P Q  +   K +W  WR+ GG + TR   GP  +C    G  RS D
Sbjct: 286 EEQSRIRSYNDFNVP-QATIPHAKLLW--WRAKGGARRTRDPLGPWTSCHIGHGNMRSID 342


>SB_18417| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 441

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = -2

Query: 135 CGG*ACVSRCGHRSPSTRLSLPTLRSMLSCIGGAC 31
           CGG  C   CG     T ++       LSC GG C
Sbjct: 327 CGGDRCTQECGKN--CTSMACTAKSCELSCPGGGC 359


>SB_55214| Best HMM Match : DUF1665 (HMM E-Value=3)
          Length = 452

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 200 QEPSGDAQFPAFEPPW 247
           +EPSG   FPA+ P W
Sbjct: 132 EEPSGYVSFPAYRPEW 147


>SB_47601| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 652

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -3

Query: 311 PAPHPRSSIPPTPACDPQG 255
           PAPH R  I P P+  P G
Sbjct: 254 PAPHTREKIAPVPSSKPAG 272


>SB_1363| Best HMM Match : Chorion_3 (HMM E-Value=2.9)
          Length = 624

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 16/33 (48%), Positives = 18/33 (54%)
 Frame = +2

Query: 242 PWQRRLGDRKPVWEGWRSVGGGQDTRGSRGPSP 340
           PW R+L    PV  G  +V GGQ T GS G  P
Sbjct: 16  PWSRKLCTLPPVLAGAVAVCGGQ-TLGSGGYMP 47


>SB_32581| Best HMM Match : DUF1017 (HMM E-Value=8.4)
          Length = 308

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 342 VGLGPREPRVSCPPPTLLHPSHTGLRSP 259
           +G+ PR P    P     HP+H+ LR P
Sbjct: 104 MGMEPRRPASKSPSTVEHHPNHSLLRHP 131


>SB_47534| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 488

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 30/111 (27%), Positives = 38/111 (34%), Gaps = 12/111 (10%)
 Frame = +2

Query: 56  MDLSVGSDSLVDGDRWPHRLTQAQPPHRYTGTESG-----PSSHIFSHKGGLLQEPSGDA 220
           M L++G  +   G+RW      AQP     G   G     P   +    GG      G  
Sbjct: 195 MVLTMGGGTTTHGERWSLPWAVAQPRMEEDGPYHGRWHNHPWRKMVLTMGGGTTTHGGRW 254

Query: 221 QFP-AFEPPWQRRLGDRKPVWEG--WR----SVGGGQDTRGSRGPSPTCAA 352
             P A   P   + G     W    WR    ++GGG  T G R   P   A
Sbjct: 255 SLPWAVAQPLMEKDGPYHGRWHNHPWRKMVLTMGGGTTTHGERWSLPWAVA 305


>SB_22845| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1422

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 342  VGLGPREPRVSCPPPTLLHPSHTGLRSP 259
            +G+ PR P    P     HP+H+ LR P
Sbjct: 1189 MGMEPRRPASKSPSTVEHHPNHSLLRHP 1216


>SB_3733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1755

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 20  TTTRHAPPMQDSMDLSVGSDSLVDGDRWPHRLTQAQPP 133
           T +R + P+ DS++L   SDS    D  P R    +PP
Sbjct: 574 TNSRASQPLDDSLNLPQDSDSNEMADFPPRRGVYEKPP 611


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,645,242
Number of Sequences: 59808
Number of extensions: 353150
Number of successful extensions: 1372
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1368
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1087245449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)