Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1172X
         (502 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439060-4|CAD27755.1|  151|Anopheles gambiae putative sRNP prot...    29   0.12 
M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.           27   0.36 
AY578805-1|AAT07310.1|  753|Anopheles gambiae medea protein.           25   1.9  
AB090812-1|BAC57899.1|  541|Anopheles gambiae gag-like protein p...    24   2.5  
AY705405-1|AAU12514.1|  519|Anopheles gambiae nicotinic acetylch...    24   3.3  
AJ549085-1|CAD70159.1|  529|Anopheles gambiae thioredoxin-disulf...    23   4.4  
AJ549084-1|CAD70158.1|  505|Anopheles gambiae thioredoxin-disulf...    23   4.4  
AJ459821-1|CAD30858.1|  502|Anopheles gambiae thioredoxin reduct...    23   4.4  

>AJ439060-4|CAD27755.1|  151|Anopheles gambiae putative sRNP
           protein.
          Length = 151

 Score = 28.7 bits (61), Expect = 0.12
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 333 GPREPRVSCPPPTLLHPSHTGL 268
           GP +P +S PPPT+  P   G+
Sbjct: 70  GPPKPNISIPPPTMNMPPRPGM 91



 Score = 23.0 bits (47), Expect = 5.8
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 354 GAAQVGLGPREPRVSCPPPTL 292
           G   +GLG R P +S  PP L
Sbjct: 127 GMPPMGLGMRPPVMSAAPPQL 147


>M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.
          Length = 1212

 Score = 27.1 bits (57), Expect = 0.36
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +2

Query: 56  MDLSVGSDSLVDGDRWPHRLTQAQPPHRYTGTESGPSS 169
           +D++  S S+     W  R T  +  HRY     GP+S
Sbjct: 231 VDVTFASSSIAQPSTWLVRNTDTRSDHRYITYSVGPAS 268



 Score = 24.6 bits (51), Expect = 1.9
 Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
 Frame = -2

Query: 330 PREPRVS--CPPPTLLHPSHTG 271
           P+ PR+S  C P   LHP  TG
Sbjct: 3   PQRPRLSVTCRPTKCLHPLRTG 24


>AY578805-1|AAT07310.1|  753|Anopheles gambiae medea protein.
          Length = 753

 Score = 24.6 bits (51), Expect = 1.9
 Identities = 21/64 (32%), Positives = 27/64 (42%)
 Frame = +2

Query: 107 HRLTQAQPPHRYTGTESGPSSHIFSHKGGLLQEPSGDAQFPAFEPPWQRRLGDRKPVWEG 286
           H+   +Q   +Y    SG SS       G     +   Q  A E P Q+RL  R+P  E 
Sbjct: 467 HQQQASQQQSQYWPHGSGGSSSAVVAPSGASVGNATGGQL-AGELPGQQRLLSRQPAPEY 525

Query: 287 WRSV 298
           W SV
Sbjct: 526 WCSV 529


>AB090812-1|BAC57899.1|  541|Anopheles gambiae gag-like protein
           protein.
          Length = 541

 Score = 24.2 bits (50), Expect = 2.5
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +1

Query: 367 QQRQDTEMQMYMPAKTMPEVPIVYSSQQQTLRDGPKK 477
           QQ+Q  + Q Y+P +   +       QQQ +R  P K
Sbjct: 278 QQQQQHQGQRYVPPQLRQQAHQQQQRQQQKVRPRPDK 314


>AY705405-1|AAU12514.1|  519|Anopheles gambiae nicotinic
           acetylcholine receptor subunitbeta 1 protein.
          Length = 519

 Score = 23.8 bits (49), Expect = 3.3
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = -2

Query: 405 RHIHLHLRVLSLLRNGPGAAQVGLGPREPRVSCPPPTLLHPSH 277
           R + LH     LL   P   ++      P +S PP    HPS+
Sbjct: 334 RSVFLHYLPAMLLMKRPRKTRLRWMMEMPGMSVPPQPHTHPSY 376


>AJ549085-1|CAD70159.1|  529|Anopheles gambiae thioredoxin-disulfide
           reductase protein.
          Length = 529

 Score = 23.4 bits (48), Expect = 4.4
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -2

Query: 381 VLSLLRNGPGAAQVGLGPREPRVSCPPPTLLH 286
           VL  ++  P   + GLG     V C P  L+H
Sbjct: 65  VLDFVKPSPRGTKWGLGGTCVNVGCIPKKLMH 96


>AJ549084-1|CAD70158.1|  505|Anopheles gambiae thioredoxin-disulfide
           reductase protein.
          Length = 505

 Score = 23.4 bits (48), Expect = 4.4
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -2

Query: 381 VLSLLRNGPGAAQVGLGPREPRVSCPPPTLLH 286
           VL  ++  P   + GLG     V C P  L+H
Sbjct: 41  VLDFVKPSPRGTKWGLGGTCVNVGCIPKKLMH 72


>AJ459821-1|CAD30858.1|  502|Anopheles gambiae thioredoxin reductase
           protein.
          Length = 502

 Score = 23.4 bits (48), Expect = 4.4
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -2

Query: 381 VLSLLRNGPGAAQVGLGPREPRVSCPPPTLLH 286
           VL  ++  P   + GLG     V C P  L+H
Sbjct: 38  VLDFVKPSPRGTKWGLGGTCVNVGCIPKKLMH 69


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 539,675
Number of Sequences: 2352
Number of extensions: 11952
Number of successful extensions: 45
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 44823054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)