Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1172X
(502 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40420-3|AAK84527.2| 232|Caenorhabditis elegans Prion-like-(q/n... 32 0.20
AF039050-17|AAC47930.1| 72|Caenorhabditis elegans Neuropeptide... 31 0.36
AC024788-3|AAF60614.2| 98|Caenorhabditis elegans Caenacin (cae... 31 0.62
AC025716-19|AAK39602.2| 549|Caenorhabditis elegans Hypothetical... 29 1.9
Z92838-9|CAD30449.1| 549|Caenorhabditis elegans Hypothetical pr... 28 3.3
Z92838-8|CAB07407.1| 401|Caenorhabditis elegans Hypothetical pr... 28 3.3
Z92838-7|CAB07405.1| 593|Caenorhabditis elegans Hypothetical pr... 28 3.3
Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical pr... 28 3.3
Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical pr... 28 3.3
AF286206-1|AAK28741.1| 549|Caenorhabditis elegans C kinase adap... 28 3.3
AF286205-1|AAK28740.1| 593|Caenorhabditis elegans C kinase adap... 28 3.3
AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein. 28 3.3
AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein. 28 3.3
Z81519-5|CAI46603.1| 590|Caenorhabditis elegans Hypothetical pr... 28 4.4
Z81519-4|CAB04218.1| 592|Caenorhabditis elegans Hypothetical pr... 28 4.4
AL132860-3|CAB60514.2| 342|Caenorhabditis elegans Hypothetical ... 28 4.4
AL117199-3|CAB55043.3| 868|Caenorhabditis elegans Hypothetical ... 27 5.8
Z68011-3|CAA92014.2| 821|Caenorhabditis elegans Hypothetical pr... 27 7.6
Z50071-4|CAA90409.2| 1301|Caenorhabditis elegans Hypothetical pr... 27 7.6
Z49968-1|CAA90258.2| 499|Caenorhabditis elegans Hypothetical pr... 27 7.6
>U40420-3|AAK84527.2| 232|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 37
protein.
Length = 232
Score = 32.3 bits (70), Expect = 0.20
Identities = 22/63 (34%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Frame = +2
Query: 182 HKGGLLQEPSGDAQFPAFEPPWQRRLGDRKPVWEG-WRSVGGGQDTRGSRG--PSPTCAA 352
H G EP+G A A P Q +G+ W+G W S G GQ G G +P
Sbjct: 68 HWNGRFWEPAGQAISEAIRNPIQNTVGNG---WQGGWGSNGNGQGNGGGGGSPQTPVQIQ 124
Query: 353 PGP 361
P P
Sbjct: 125 PAP 127
>AF039050-17|AAC47930.1| 72|Caenorhabditis elegans
Neuropeptide-like protein protein27 protein.
Length = 72
Score = 31.5 bits (68), Expect = 0.36
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 256 PWGSQAGVGGMEERGWGAGYPRLAWPEP 339
P+G G+GG G+G GY R W P
Sbjct: 30 PYGGYGGMGGYGMGGYGMGYRRRMWGSP 57
>AC024788-3|AAF60614.2| 98|Caenorhabditis elegans Caenacin
(caenorhabditis bacteriocin)protein 6 protein.
Length = 98
Score = 30.7 bits (66), Expect = 0.62
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +1
Query: 259 WGSQAGVGGMEERGWGAGYPRLAW 330
WG GG RGWG G+ R W
Sbjct: 62 WGRPMWGGGWGRRGWGGGWGRRGW 85
>AC025716-19|AAK39602.2| 549|Caenorhabditis elegans Hypothetical
protein Y39G10AR.17 protein.
Length = 549
Score = 29.1 bits (62), Expect = 1.9
Identities = 16/43 (37%), Positives = 18/43 (41%)
Frame = +2
Query: 233 FEPPWQRRLGDRKPVWEGWRSVGGGQDTRGSRGPSPTCAAPGP 361
F P Q +G R P S GG R RGP +PGP
Sbjct: 170 FFPSEQAHVGPRTPPSPAVDSDGGSYPKRPRRGPKTPPGSPGP 212
>Z92838-9|CAD30449.1| 549|Caenorhabditis elegans Hypothetical
protein T03D8.1c protein.
Length = 549
Score = 28.3 bits (60), Expect = 3.3
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -1
Query: 307 PPTHAPPSLPHRLAIPKAS 251
PP HAPP LP R A+ S
Sbjct: 475 PPAHAPPPLPVRQAVSNGS 493
>Z92838-8|CAB07407.1| 401|Caenorhabditis elegans Hypothetical
protein T03D8.1b protein.
Length = 401
Score = 28.3 bits (60), Expect = 3.3
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -1
Query: 307 PPTHAPPSLPHRLAIPKAS 251
PP HAPP LP R A+ S
Sbjct: 327 PPAHAPPPLPVRQAVSNGS 345
>Z92838-7|CAB07405.1| 593|Caenorhabditis elegans Hypothetical
protein T03D8.1a protein.
Length = 593
Score = 28.3 bits (60), Expect = 3.3
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -1
Query: 307 PPTHAPPSLPHRLAIPKAS 251
PP HAPP LP R A+ S
Sbjct: 519 PPAHAPPPLPVRQAVSNGS 537
>Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical
protein C12C8.3b protein.
Length = 1143
Score = 28.3 bits (60), Expect = 3.3
Identities = 18/68 (26%), Positives = 25/68 (36%)
Frame = +2
Query: 59 DLSVGSDSLVDGDRWPHRLTQAQPPHRYTGTESGPSSHIFSHKGGLLQEPSGDAQFPAFE 238
+LS+G S +GD H + P H + G G L P Q P +
Sbjct: 36 ELSMGGSSS-EGDSMSHHRGEHSPNHHHQDNHLGSGPPPPQFTGSLFDTPPSMIQSPQQQ 94
Query: 239 PPWQRRLG 262
P +Q G
Sbjct: 95 PQFQFNTG 102
>Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical
protein C12C8.3a protein.
Length = 1147
Score = 28.3 bits (60), Expect = 3.3
Identities = 18/68 (26%), Positives = 25/68 (36%)
Frame = +2
Query: 59 DLSVGSDSLVDGDRWPHRLTQAQPPHRYTGTESGPSSHIFSHKGGLLQEPSGDAQFPAFE 238
+LS+G S +GD H + P H + G G L P Q P +
Sbjct: 36 ELSMGGSSS-EGDSMSHHRGEHSPNHHHQDNHLGSGPPPPQFTGSLFDTPPSMIQSPQQQ 94
Query: 239 PPWQRRLG 262
P +Q G
Sbjct: 95 PQFQFNTG 102
>AF286206-1|AAK28741.1| 549|Caenorhabditis elegans C kinase adapter
1s protein.
Length = 549
Score = 28.3 bits (60), Expect = 3.3
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -1
Query: 307 PPTHAPPSLPHRLAIPKAS 251
PP HAPP LP R A+ S
Sbjct: 475 PPAHAPPPLPVRQAVSNGS 493
>AF286205-1|AAK28740.1| 593|Caenorhabditis elegans C kinase adapter
1 protein.
Length = 593
Score = 28.3 bits (60), Expect = 3.3
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -1
Query: 307 PPTHAPPSLPHRLAIPKAS 251
PP HAPP LP R A+ S
Sbjct: 519 PPAHAPPPLPVRQAVSNGS 537
>AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein.
Length = 1147
Score = 28.3 bits (60), Expect = 3.3
Identities = 18/68 (26%), Positives = 25/68 (36%)
Frame = +2
Query: 59 DLSVGSDSLVDGDRWPHRLTQAQPPHRYTGTESGPSSHIFSHKGGLLQEPSGDAQFPAFE 238
+LS+G S +GD H + P H + G G L P Q P +
Sbjct: 36 ELSMGGSSS-EGDSMSHHRGEHSPNHHHQDNHLGSGPPPPQFTGSLFDTPPSMIQSPQQQ 94
Query: 239 PPWQRRLG 262
P +Q G
Sbjct: 95 PQFQFNTG 102
>AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein.
Length = 1143
Score = 28.3 bits (60), Expect = 3.3
Identities = 18/68 (26%), Positives = 25/68 (36%)
Frame = +2
Query: 59 DLSVGSDSLVDGDRWPHRLTQAQPPHRYTGTESGPSSHIFSHKGGLLQEPSGDAQFPAFE 238
+LS+G S +GD H + P H + G G L P Q P +
Sbjct: 36 ELSMGGSSS-EGDSMSHHRGEHSPNHHHQDNHLGSGPPPPQFTGSLFDTPPSMIQSPQQQ 94
Query: 239 PPWQRRLG 262
P +Q G
Sbjct: 95 PQFQFNTG 102
>Z81519-5|CAI46603.1| 590|Caenorhabditis elegans Hypothetical
protein F29C12.1b protein.
Length = 590
Score = 27.9 bits (59), Expect = 4.4
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +1
Query: 364 PQQRQDTEMQMYMPAKTMPEVPIVYSSQQQTLRDGPKKGLELP 492
P Q+Q Y+P P++P+ + QQQ + P++ L P
Sbjct: 391 PHQQQYQNQNNYLPQPQQPQLPV--APQQQVQQQRPQQPLPQP 431
>Z81519-4|CAB04218.1| 592|Caenorhabditis elegans Hypothetical
protein F29C12.1a protein.
Length = 592
Score = 27.9 bits (59), Expect = 4.4
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +1
Query: 364 PQQRQDTEMQMYMPAKTMPEVPIVYSSQQQTLRDGPKKGLELP 492
P Q+Q Y+P P++P+ + QQQ + P++ L P
Sbjct: 393 PHQQQYQNQNNYLPQPQQPQLPV--APQQQVQQQRPQQPLPQP 433
>AL132860-3|CAB60514.2| 342|Caenorhabditis elegans Hypothetical
protein Y56A3A.4 protein.
Length = 342
Score = 27.9 bits (59), Expect = 4.4
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +1
Query: 319 RLAWPEPDLRRAWPVPQQRQDTE-MQMYMPAKTMPE 423
++ +P P +R P PQQ+Q QM +P + P+
Sbjct: 79 QMPYPSPQMRAGPPPPQQQQQQHFQQMGIPQQQQPQ 114
>AL117199-3|CAB55043.3| 868|Caenorhabditis elegans Hypothetical
protein Y43F11A.5 protein.
Length = 868
Score = 27.5 bits (58), Expect = 5.8
Identities = 17/54 (31%), Positives = 23/54 (42%)
Frame = +2
Query: 14 VPTTTRHAPPMQDSMDLSVGSDSLVDGDRWPHRLTQAQPPHRYTGTESGPSSHI 175
+ T + PP D L G+ + + G+ P QAQ Y G E G S I
Sbjct: 430 ISETQQQEPPQDDIQFLYEGNQANITGNEQPEACAQAQ---LYYGPEPGVSVQI 480
>Z68011-3|CAA92014.2| 821|Caenorhabditis elegans Hypothetical
protein T21B6.3 protein.
Length = 821
Score = 27.1 bits (57), Expect = 7.6
Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 3/22 (13%)
Frame = -3
Query: 311 PAPHP---RSSIPPTPACDPQG 255
P P+P R + PP PACD QG
Sbjct: 426 PQPYPTRYRPAPPPPPACDGQG 447
>Z50071-4|CAA90409.2| 1301|Caenorhabditis elegans Hypothetical protein
T07D4.3 protein.
Length = 1301
Score = 27.1 bits (57), Expect = 7.6
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +2
Query: 245 WQRRLGDRKPVWEGWRSVGGGQDTRGSRG 331
W G+ V G+R GGG RG RG
Sbjct: 1255 WNAGRGNYGNVGSGYRGAGGGGGYRGGRG 1283
>Z49968-1|CAA90258.2| 499|Caenorhabditis elegans Hypothetical
protein M110.1 protein.
Length = 499
Score = 27.1 bits (57), Expect = 7.6
Identities = 15/39 (38%), Positives = 17/39 (43%)
Frame = +2
Query: 263 DRKPVWEGWRSVGGGQDTRGSRGPSPTCAAPGPFRSSDK 379
D +P EG G Q RGSRG PGP S +
Sbjct: 225 DGRPGLEGTPGTRGVQGERGSRGARGPPGPPGPAGSDGR 263
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,491,172
Number of Sequences: 27780
Number of extensions: 249745
Number of successful extensions: 1143
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1141
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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