Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1172X
         (502 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g21290.1 68416.m02690 dentin sialophosphoprotein-related cont...    31   0.58 
At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondria...    28   4.1  
At5g41430.1 68418.m05032 zinc finger (C3HC4-type RING finger) fa...    27   7.1  
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative...    27   7.1  
At1g56210.1 68414.m06460 copper chaperone (CCH)-related low simi...    27   7.1  
At5g67600.1 68418.m08524 expressed protein                             27   9.4  
At5g41310.1 68418.m05020 kinesin motor protein-related                 27   9.4  
At4g28690.1 68417.m04099 expressed protein                             27   9.4  
At2g32430.1 68415.m03962 galactosyltransferase family protein co...    27   9.4  
At1g48620.1 68414.m05439 histone H1/H5 family protein weak simil...    27   9.4  
At1g35617.1 68414.m04424 hypothetical protein                          27   9.4  

>At3g21290.1 68416.m02690 dentin sialophosphoprotein-related
           contains weak similarity to Dentin sialophosphoprotein
           precursor (Swiss-Prot:Q9NZW4) [Homo sapiens]
          Length = 1192

 Score = 30.7 bits (66), Expect = 0.58
 Identities = 21/50 (42%), Positives = 22/50 (44%)
 Frame = -2

Query: 366 RNGPGAAQVGLGPREPRVSCPPPTLLHPSHTGLRSPRRRCQGGSKAGNWA 217
           R G G    G GP   R S PPPT  HPS  G     R   GG   G+ A
Sbjct: 11  RGGSGGG--GSGPSRNRNSFPPPTNRHPSPIG-----RMSSGGGGGGSAA 53


>At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondrial
           identical to SP|P83483 ATP synthase beta chain 1,
           mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
           thaliana}; strong similarity to SP|P17614 ATP synthase
           beta chain, mitochondrial precursor (EC 3.6.3.14)
           {Nicotiana plumbaginifolia}; contains Pfam profiles
           PF00006: ATP synthase alpha/beta family
           nucleotide-binding domain, PF00306: ATP synthase ab C
           terminal, PF02874: ATP synthase alpha/beta family
           beta-barrel domain; supporting cDNA
           gi|26452102|dbj|AK118538.1|
          Length = 556

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -2

Query: 384 RVLS-LLRNGPGAAQVGLGPREPRVSCPPP 298
           RVLS LLR+  G +   LG R PR+  P P
Sbjct: 5   RVLSSLLRSSSGRSAAKLGNRNPRLPSPSP 34


>At5g41430.1 68418.m05032 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 161

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = +1

Query: 316 PRLAWPEPDLRRAWPVPQQRQDTEMQMYMPAKTMPEVPIVY--SSQQQTLRDGPKKGLE 486
           P L  P P L    P PQ +QD E    MP  +  E  I Y  S ++   +D  K+G +
Sbjct: 56  PPLPVPLP-LPLPQPQPQPQQDNETGHLMPLHSQLEFKIGYRASIEEMEFKDIEKEGFD 113


>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
           PABP, putative
          Length = 662

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = +1

Query: 331 PEPDLRRAWPVPQQRQDTEMQMYMPAKTMPE-VPIVYSSQQQTLRDGPKKGLELP 492
           P P  RR+   P + Q  +   YM  + MP      Y S  + + DGP  G  +P
Sbjct: 489 PRPGGRRSGDGPMRHQHQQPMPYMQPQMMPRGRGYRYPSGGRNMPDGPMPGGMVP 543


>At1g56210.1 68414.m06460 copper chaperone (CCH)-related low
           similarity to copper homeostasis factor
           [GI:3168840][PMID:9701579] and farnesylated proteins
           ATFP3 [GI:4097547] and GMFP7 [Glycine max][GI:4097573];
           contains PF00403 Heavy-metal-associated domain
          Length = 364

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = +1

Query: 367 QQRQDTEMQMYMPAKTMPEVPIVYSS 444
           +Q+Q T+++  +P  T+P +P+ Y S
Sbjct: 16  KQKQSTQIKQDLPPPTIPPLPLPYKS 41


>At5g67600.1 68418.m08524 expressed protein
          Length = 82

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 283 GMEERGWGAGYPRLAWPEPDLRRAWPVPQQRQDTEM 390
           G    G+  GYP   +P P   +A   PQQ+Q+  M
Sbjct: 32  GYPPPGYAQGYPAQGYPPPQYSQA---PQQKQNAGM 64


>At5g41310.1 68418.m05020 kinesin motor protein-related 
          Length = 961

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -2

Query: 348  AQVGLGPREPRVSCPPPTLLHPSHTGLRSPRRRCQGGSK 232
            A VG+GP +P    P P +  PS   + +   +    SK
Sbjct: 906  AHVGVGPSKPLKHTPKPDISKPSRLSISTTSSKALTSSK 944


>At4g28690.1 68417.m04099 expressed protein 
          Length = 448

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 21/89 (23%), Positives = 32/89 (35%), Gaps = 5/89 (5%)
 Frame = +2

Query: 104 PHRLTQAQPPHRYTGTESGPSSHIFSHKGGLLQEPSGDAQFPAFEPPWQRRLGDRKPVWE 283
           PH + Q+ P H+       PS  +      +L     +  +P          G +   + 
Sbjct: 243 PHAM-QSLPNHKSGSNNGNPSPQVVPSNPYVLTRRPSNGVYPPENSVQNISQGLQPTYYA 301

Query: 284 GWRSVGGGQDTR-----GSRGPSPTCAAP 355
              +  G Q TR      S+G  PTC AP
Sbjct: 302 PLMASQGSQPTRFAPPVASQGSQPTCCAP 330


>At2g32430.1 68415.m03962 galactosyltransferase family protein
           contains Pfam profile: PF01762 galactosyltransferase
          Length = 409

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -2

Query: 438 VHYRHLGHCLSRHIHLHLRVLSLLRNGPGAAQVGLGPREP 319
           V+   LG  L RH   H   L  +++GP  +Q G+   EP
Sbjct: 250 VNIATLGETLVRHRKKHRVYLGCMKSGPVLSQKGVRYHEP 289


>At1g48620.1 68414.m05439 histone H1/H5 family protein weak
           similarity to HMG I/Y like protein [Glycine max]
           GI:15706274, HMG-I/Y protein HMGa [Triticum aestivum]
           GI:20502966; contains Pfam profiles PF00538: linker
           histone H1 and H5 family, PF02178: AT hook motif
          Length = 479

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = +2

Query: 221 QFPAFEPPWQRRLGDRKPVWEGWRSVGGGQDTRGSRGPSPTCAAPG 358
           Q P   PP + R     P  +   SV GG +T   RG  P+  A G
Sbjct: 237 QQPVKRPPGRPRKDGTSPTVKPAASVSGGVETVKRRGRPPSGRAAG 282


>At1g35617.1 68414.m04424 hypothetical protein
          Length = 121

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = -3

Query: 311 PAPHPRSSIPPTPACDP 261
           PAP P SS PPTP   P
Sbjct: 23  PAPPPESSSPPTPPEPP 39


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,257,465
Number of Sequences: 28952
Number of extensions: 247230
Number of successful extensions: 931
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)