Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1171
         (498 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    24   0.66 
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    24   0.66 
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    24   0.66 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   2.0  

>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 24.2 bits (50), Expect = 0.66
 Identities = 8/9 (88%), Positives = 9/9 (100%)
 Frame = +2

Query: 110 CELPSAGLC 136
           CE+PSAGLC
Sbjct: 104 CEMPSAGLC 112


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 24.2 bits (50), Expect = 0.66
 Identities = 8/9 (88%), Positives = 9/9 (100%)
 Frame = +2

Query: 110 CELPSAGLC 136
           CE+PSAGLC
Sbjct: 52  CEMPSAGLC 60


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 24.2 bits (50), Expect = 0.66
 Identities = 8/9 (88%), Positives = 9/9 (100%)
 Frame = +2

Query: 110 CELPSAGLC 136
           CE+PSAGLC
Sbjct: 235 CEMPSAGLC 243


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 468 RRAESQQIRSTTLLYRAQHPARNG 397
           +R +S  +R    L RAQH  +NG
Sbjct: 594 KRKKSLPVRKLLELERAQHEFKNG 617


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,570
Number of Sequences: 336
Number of extensions: 2444
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11735024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)