Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1171
         (498 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces...    29   0.51 
SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase |Sc...    25   4.8  
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    25   6.3  
SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces pom...    25   6.3  
SPAC23H3.02c |ini1||RING finger-like protein Ini1|Schizosaccharo...    25   6.3  
SPCC1259.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   6.3  
SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.4  
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce...    25   8.4  

>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 745

 Score = 28.7 bits (61), Expect = 0.51
 Identities = 20/72 (27%), Positives = 36/72 (50%)
 Frame = -2

Query: 458 SLNRFAARRCSTEHNTPPGTEVVYRLFRAPTSN*VISGLRSRDARVKKKTDSIDLRDPNG 279
           SLNR  ++R S  ++T P + ++      PTSN  I   ++ D  + + ++  D  D N 
Sbjct: 442 SLNRHISKRSSNSNDTAPSSHIIADKNLEPTSN--IQLKKNPDGNLVETSELSD-SDENS 498

Query: 278 LLRRVSRFNAKR 243
           +L   S   +K+
Sbjct: 499 VLSNKSSTLSKK 510


>SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 340 RSPDITQFDVGARNSL*TTSVPGGVLCSVEQRRAAN 447
           R+ ++T+F+VG      TT      L  +EQ R AN
Sbjct: 464 RTAELTEFEVGLFTGEYTTGASKEYLVHLEQMRIAN 499


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 17/38 (44%), Positives = 23/38 (60%)
 Frame = -1

Query: 480 RITWRRAESQQIRSTTLLYRAQHPARNGSRLQTIPSPD 367
           RIT  R E  Q  + TL + AQ  A++  +LQT+PS D
Sbjct: 139 RIT--RQEIGQQLTETLGFGAQLLAQHLEKLQTVPSTD 174


>SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 166

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +3

Query: 279 PIWIAEIDAIGFFLNTCITAPKSGY--NSVRCRGSE*SVDD 395
           P W+AE+ AI  F++  + AP S    N+++   +  S+ D
Sbjct: 43  PFWLAEVLAINSFVSIHMPAPFSSVVRNALKANPNSVSIRD 83


>SPAC23H3.02c |ini1||RING finger-like protein
           Ini1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 82  PNVRNCGSSRTEQYYYRNDKPSVG 11
           P V N GSSRT+ +Y R    + G
Sbjct: 86  PRVINLGSSRTDWFYERKKFKNAG 109


>SPCC1259.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 168

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 8/30 (26%), Positives = 20/30 (66%)
 Frame = +3

Query: 285 WIAEIDAIGFFLNTCITAPKSGYNSVRCRG 374
           W++++ A+    N+ ++ PKS ++ ++ RG
Sbjct: 104 WLSKLTALSKSTNSTLSTPKSFHSPLQSRG 133


>SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 386

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = -1

Query: 174 DSARLASALEAFRHNPADGSSHHXRSAECMNQMSETAVPLVLSS 43
           D+  L+++ E F  +P+DG +   R+ +  + MS      +LSS
Sbjct: 202 DTPSLSNSQERFSKSPSDGQNVRSRAKKIPSGMSAEESDELLSS 245


>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 568

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +2

Query: 113 ELPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQ 226
           E  +A     A +AEA   E+ K+++  EP+++  +K+
Sbjct: 93  EAAAAARAAAAKEAEAKRLEAAKNIVLKEPKDAPAAKK 130


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,094,809
Number of Sequences: 5004
Number of extensions: 41843
Number of successful extensions: 120
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)