Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1171
(498 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1157 - 31333870-31334220,31334440-31334590,31334678-313349... 31 0.39
05_04_0017 + 17180991-17181074,17181657-17181759,17181794-17182014 31 0.68
02_05_0290 - 27571504-27572119,27572211-27572279,27573205-275733... 31 0.68
01_06_0695 - 31292622-31293317 28 4.8
12_01_0222 - 1675077-1675289,1675476-1675553,1675943-1676002,167... 27 6.3
11_01_0221 - 1720952-1721164,1721351-1721428,1721836-1721895,172... 27 6.3
07_03_0626 + 20060013-20060273,20061017-20061274 27 6.3
10_08_0113 - 14896341-14897153 27 8.4
09_04_0484 + 17990020-17990488,17990930-17991009,17991122-179915... 27 8.4
08_02_1485 - 27466761-27467753 27 8.4
07_03_0401 + 17724103-17724463,17724554-17724683,17725068-177250... 27 8.4
06_01_0329 + 2383305-2384057,2385423-2385469,2386383-2386815,238... 27 8.4
04_04_1095 - 30839573-30839769,30839817-30839964,30840421-308409... 27 8.4
>04_04_1157 -
31333870-31334220,31334440-31334590,31334678-31334909,
31335001-31335211,31335517-31335635,31335720-31335953,
31336000-31336201,31336297-31336676,31336792-31336856,
31337362-31337427,31337883-31337957,31338233-31338304,
31338994-31339062,31339150-31339221,31339325-31339396,
31339791-31339862,31339947-31340018,31340474-31340545,
31340645-31340828,31341474-31341588
Length = 961
Score = 31.5 bits (68), Expect = 0.39
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 177 ARICSLWSPESREALNNVTLLVAFRIKTRDAT*KPIWIAE 296
A +C+ WSP R ++ V ++A ++ D KP +I E
Sbjct: 878 ALLCTQWSPHQRAPMSRVVSMLAGDVEVPDVLTKPSYITE 917
>05_04_0017 + 17180991-17181074,17181657-17181759,17181794-17182014
Length = 135
Score = 30.7 bits (66), Expect = 0.68
Identities = 19/70 (27%), Positives = 34/70 (48%)
Frame = +2
Query: 20 WLVVAIVILLSTRGTAVSDIWFMHSAERXWCELPSAGLCLNASKAEASLAESGKDMLTVE 199
WL V ++ S + +A+ +W + A + P A + A A+L + +
Sbjct: 64 WLEVVGRVVGSDKASAMESLWKVVGAAKHGGG-PVAAMARQLPSALATLGAATVPVGASG 122
Query: 200 PRESGGSKQC 229
PR+SGGS++C
Sbjct: 123 PRDSGGSRRC 132
>02_05_0290 -
27571504-27572119,27572211-27572279,27573205-27573332,
27573854-27573976
Length = 311
Score = 30.7 bits (66), Expect = 0.68
Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = -3
Query: 439 HDAALPSTTPRQERKSSTDYSE-PRHRTELYPDFGAVMHVLRKKPIASISAIQMGFYVAS 263
H AA PS+T R +SST S R +L+ D+ + + + + ++A+++ +Y A
Sbjct: 181 HSAASPSSTQRSRGRSSTTCSSGKRQLPQLWRDWPLQRVLQQPQLVQPVAALELRWYNAG 240
Query: 262 RVLM 251
++
Sbjct: 241 EAIL 244
>01_06_0695 - 31292622-31293317
Length = 231
Score = 27.9 bits (59), Expect = 4.8
Identities = 15/45 (33%), Positives = 18/45 (40%)
Frame = -3
Query: 442 QHDAALPSTTPRQERKSSTDYSEPRHRTELYPDFGAVMHVLRKKP 308
Q D PS++ SST S P HR L P V + P
Sbjct: 13 QQDPNSPSSSTSSSSSSSTSPSHPHHRAPLPPSPRPVPRTIETTP 57
>12_01_0222 -
1675077-1675289,1675476-1675553,1675943-1676002,
1676103-1676206,1676321-1676479,1676768-1676894,
1677569-1677736,1677890-1678000,1678090-1678243,
1678409-1678744,1678854-1679038,1679141-1679239,
1679376-1679639,1679776-1679952,1680351-1680644,
1680753-1680920,1681574-1681918,1682002-1682171,
1682272-1682422,1683296-1683365,1683456-1683640,
1683999-1684092,1684195-1684313,1684658-1684717,
1684844-1684930,1685631-1685717,1685905-1686013,
1686105-1686183,1686350-1686437,1686611-1686675,
1687570-1687722,1688514-1688620,1688702-1688784,
1688926-1689016,1689095-1689231,1689612-1689701,
1689795-1689962,1690366-1690560
Length = 1809
Score = 27.5 bits (58), Expect = 6.3
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = -2
Query: 398 EVVYRLFRAPTSN*VISGLRSRDARVKKKTDSIDLRDPNGLLRRVSRFN 252
E+VY L+ A S+ S + + +K+K +++L D N + + + FN
Sbjct: 242 EIVYPLYLAAASDSQESVTKRGEELLKRKASAVNLEDSNLMKKLFTLFN 290
>11_01_0221 -
1720952-1721164,1721351-1721428,1721836-1721895,
1721996-1722099,1722214-1722372,1722668-1722794,
1723469-1723636,1723789-1723899,1723989-1724142,
1724308-1724643,1724753-1724937,1725040-1725138,
1725275-1725538,1725674-1725850,1726249-1726542,
1726649-1726816,1727473-1727817,1727901-1728070,
1728171-1728321,1729193-1729262,1729353-1729537,
1729896-1729989,1730094-1730212,1730558-1730617,
1730744-1730830,1732348-1732434,1732622-1732730,
1732822-1732900,1733067-1733154,1733328-1733392,
1734287-1734439,1735231-1735337,1735419-1735501,
1735643-1735733,1735812-1735948,1736118-1736207,
1736301-1736468,1736875-1737057
Length = 1805
Score = 27.5 bits (58), Expect = 6.3
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = -2
Query: 398 EVVYRLFRAPTSN*VISGLRSRDARVKKKTDSIDLRDPNGLLRRVSRFN 252
E+VY L+ A S+ S + + +K+K +++L D N + + + FN
Sbjct: 238 EIVYPLYLAAASDSQESVTKRGEELLKRKASAVNLEDSNLMKKLFTLFN 286
>07_03_0626 + 20060013-20060273,20061017-20061274
Length = 172
Score = 27.5 bits (58), Expect = 6.3
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -2
Query: 170 RLGWLRP*RRSGIIP 126
RLGWLRP R S ++P
Sbjct: 32 RLGWLRPSRLSAVVP 46
>10_08_0113 - 14896341-14897153
Length = 270
Score = 27.1 bits (57), Expect = 8.4
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 4/27 (14%)
Frame = +2
Query: 356 LSSMSGLGIVCRRL----PFLAGCCAR 424
L++++GLGI RR P LAGCC R
Sbjct: 181 LAAIAGLGIPWRRSWPSPPSLAGCCCR 207
>09_04_0484 +
17990020-17990488,17990930-17991009,17991122-17991586,
17994670-17994756,17994887-17995018,17995102-17995293,
17995409-17995495,17995621-17996295
Length = 728
Score = 27.1 bits (57), Expect = 8.4
Identities = 15/53 (28%), Positives = 22/53 (41%)
Frame = -3
Query: 442 QHDAALPSTTPRQERKSSTDYSEPRHRTELYPDFGAVMHVLRKKPIASISAIQ 284
Q AA+P TP R+ D ++ + + D GA M P S + Q
Sbjct: 5 QQPAAVPRWTPSPRRRQDDDEADRKGAAGMVSDLGASMRGTEGFPFGSGRSFQ 57
>08_02_1485 - 27466761-27467753
Length = 330
Score = 27.1 bits (57), Expect = 8.4
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 216 PPDSRGSTVSISLPDSARLASALEAFRHNPA 124
PP + G +S +P A LA++L + NPA
Sbjct: 39 PPSATGPVLSRDVPLDASLATSLRLYLPNPA 69
>07_03_0401 +
17724103-17724463,17724554-17724683,17725068-17725083,
17725130-17725203,17725693-17725761,17726224-17726257
Length = 227
Score = 27.1 bits (57), Expect = 8.4
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = -1
Query: 180 LPDSARLASAL-EAFRHNPADGSSHHXRSAECMNQMSETAVPLVLSSITIATTS 22
+PD R +AL RH PA HH SA + + V ++ T+ ++S
Sbjct: 1 MPDQRRGTTALLPTARHGPAASDRHHSASAARRDAAATRPATSVAAANTLVSSS 54
>06_01_0329 +
2383305-2384057,2385423-2385469,2386383-2386815,
2386852-2387034,2388388-2389044
Length = 690
Score = 27.1 bits (57), Expect = 8.4
Identities = 13/48 (27%), Positives = 28/48 (58%)
Frame = -2
Query: 383 LFRAPTSN*VISGLRSRDARVKKKTDSIDLRDPNGLLRRVSRFNAKRD 240
LFR+ + SGLR ++ + +++T ++ + L +R+S +A R+
Sbjct: 453 LFRSVIKLKICSGLRKKNIKQRRRTFLLNAGEIESLKQRISESDAGRE 500
>04_04_1095 -
30839573-30839769,30839817-30839964,30840421-30840903,
30841419-30841910,30842267-30842362
Length = 471
Score = 27.1 bits (57), Expect = 8.4
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -3
Query: 457 VSTDSQHDAALP-STTPRQERKSSTDYSEPRHRTELYPDF 341
+ T+S + P S+ RQ+R + YS+P+H +L+ F
Sbjct: 386 IFTNSNRKTSRPQSSYTRQQRDLNNLYSDPKHLPQLHKHF 425
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,680,155
Number of Sequences: 37544
Number of extensions: 319022
Number of successful extensions: 854
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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