Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1171
         (498 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6472| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.23 
SB_39603| Best HMM Match : HATPase_c (HMM E-Value=0.0009)              29   2.1  
SB_8051| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.7  
SB_40185| Best HMM Match : WD40 (HMM E-Value=0)                        28   3.7  
SB_34314| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.7  
SB_25524| Best HMM Match : Ribosomal_L34e (HMM E-Value=9.6)            28   4.9  
SB_54637| Best HMM Match : DUF1621 (HMM E-Value=3)                     27   6.5  
SB_35045| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.5  
SB_49848| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.5  
SB_42494| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.5  
SB_53358| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_21309| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_47542| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_15490| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_6472| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 91

 Score = 32.3 bits (70), Expect = 0.23
 Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
 Frame = -3

Query: 424 PSTTPRQERKSSTDYSE-PRHRTELYPDFGAVMHVLRKKP----IASISAIQMGFYVASR 260
           P+T PR +R+S T  S+  RH + L PD  A  H+  ++     + ++  I +G  +   
Sbjct: 8   PNTIPRSDRRSRTGISQRHRHTSSLTPDTMAGTHLREQQSNRDLMMTVMLIMIGMLIIMM 67

Query: 259 VLMRNATSKVTLFRASR 209
           V+    +   T  R+ +
Sbjct: 68  VIRHRNSGSTTKKRSGK 84


>SB_39603| Best HMM Match : HATPase_c (HMM E-Value=0.0009)
          Length = 888

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 453 QQIRSTTLLYRAQHPARNGSRLQTIPSPD 367
           Q + ST   +R  HP +  S +QT+PS D
Sbjct: 169 QTLPSTDSAHRTDHPTQTESTVQTLPSTD 197


>SB_8051| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 840

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 12/29 (41%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
 Frame = +3

Query: 90  TRPSGXGANYHPRDYA*T-PLRPKPA*PN 173
           T+P   G +++PRD+A T  ++PKP+ P+
Sbjct: 327 TKPQPSGPSHNPRDHATTLGIKPKPSGPS 355


>SB_40185| Best HMM Match : WD40 (HMM E-Value=0)
          Length = 503

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 45  CSVREEPQFRTFGSCTRPSG 104
           CS R  P+ R F +CT PSG
Sbjct: 437 CSARTPPRRRPFTACTSPSG 456


>SB_34314| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -1

Query: 456 SQQIRSTTLLYRAQHPARNGSRLQTIPSPDIELSYIRTSE 337
           S++IR TTLL    +P  NG      P P I+L + + +E
Sbjct: 62  SERIRCTTLLQGYPNPRINGEDNNQDPRPVIQLRHAQLAE 101


>SB_25524| Best HMM Match : Ribosomal_L34e (HMM E-Value=9.6)
          Length = 148

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -3

Query: 424 PSTTPRQERKSSTDYSEPRHRTELYPDFGAVMHVLRKKP 308
           P     +E+KS+ +   PR  T LY    + + +LR+ P
Sbjct: 106 PKRACTEEKKSAENLKRPRTETTLYFGLSSSLSLLRRNP 144


>SB_54637| Best HMM Match : DUF1621 (HMM E-Value=3)
          Length = 265

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -1

Query: 456 SQQIRSTTLLYRAQHPARNGSRLQTIPSPDIELSYIRTSE 337
           S++IR TTLL    +P  NG      P P I L + + +E
Sbjct: 35  SERIRCTTLLQGYPNPRINGEDNNQDPRPVIRLRHAQLAE 74


>SB_35045| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 80

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -1

Query: 456 SQQIRSTTLLYRAQHPARNGSRLQTIPSPDIELSYIRTSE 337
           S++IR TTLL    +P  NG      P P I L + + +E
Sbjct: 35  SERIRCTTLLQGYPNPRINGEDNNQDPRPVIRLRHAQLAE 74


>SB_49848| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 133

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -1

Query: 456 SQQIRSTTLLYRAQHPARNGSRLQTIPSPDIELSYIRTSE 337
           S++IR TTLL    +P  NG      P P I L + + +E
Sbjct: 59  SERIRCTTLLQGYPNPRINGEDNNQDPRPVIRLRHAQLAE 98


>SB_42494| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 80

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -1

Query: 456 SQQIRSTTLLYRAQHPARNGSRLQTIPSPDIELSYIRTSE 337
           S++IR TTLL    +P  NG      P P I L + + +E
Sbjct: 35  SERIRCTTLLQGYPNPRINGEDNNQDPRPVIRLRHAQLAE 74


>SB_53358| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 196

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -1

Query: 120 GSSHHXRSAECMNQMSETAVPLV--LSSITIAT 28
           GSSHH R    MN+  +T + LV  LS  TI T
Sbjct: 12  GSSHHVRGELLMNRKLKTRLDLVNPLSQDTICT 44


>SB_21309| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1286

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +3

Query: 69  FRTFGSCTRPSGXGANYHPRDYA*TPLRPKPA*PNP 176
           F T  SC++    G NY P   A TP+ P+   P P
Sbjct: 608 FSTVDSCSKTCITGENYGPSPTAVTPVIPQNHPPIP 643


>SB_47542| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -1

Query: 456 SQQIRSTTLLYRAQHPARNGSRLQTIPSPDIELSYIRTSE 337
           S++I  TTLL   ++P  NG      P P I L Y + +E
Sbjct: 62  SERICCTTLLQGYRNPRINGEDNNQDPRPVIRLRYAQLAE 101


>SB_15490| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 302

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = -1

Query: 291 RSKWASTSRLAF*CETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFRHNPAD 121
           R +  +++R  +  E +L + H L PP        +S   SA  +SA   F   P D
Sbjct: 26  RGRPTASARARYRAEAQLNRRHGLSPPTPPEGISPLSSSSSASSSSAASPFHTIPRD 82


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,526,614
Number of Sequences: 59808
Number of extensions: 349689
Number of successful extensions: 3127
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3127
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)