Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1171
         (498 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U47144-5|AAB52621.2| 1410|Caenorhabditis elegans Hypothetical pr...    28   4.3  
Z36282-2|CAA85288.3|  240|Caenorhabditis elegans Hypothetical pr...    27   5.7  
Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical pr...    27   10.0 

>U47144-5|AAB52621.2| 1410|Caenorhabditis elegans Hypothetical protein
            ZC53.4 protein.
          Length = 1410

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 6/66 (9%)
 Frame = -3

Query: 409  RQERKSSTDYSEPRHRTELYPDFGAVMHVLRK---KPIASISAIQMGFYVASR---VLMR 248
            R  R+ +TD S  +HR  +Y DF +++        KP  S + + +G +VASR   V++ 
Sbjct: 860  RPSRRMTTDNSRVKHRYIIYADFESIIWKFSNAHYKPNESWT-MDVGEHVASRFCVVVVD 918

Query: 247  NATSKV 230
            + T K+
Sbjct: 919  SFTKKI 924


>Z36282-2|CAA85288.3|  240|Caenorhabditis elegans Hypothetical
           protein K10G9.2 protein.
          Length = 240

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 11/61 (18%)
 Frame = -1

Query: 207 SRGSTVSISLPDSA-----RLASALEAFRHNPADGSSHH--XRSAECMN----QMSETAV 61
           ++G ++S+SLP SA     R  +  +AFR++ A   SH    RS E  N    +  E+A+
Sbjct: 135 NKGQSLSVSLPPSARHTPHRFVNEEDAFRNSMASSDSHSSVARSDEYNNGYVLEEEESAI 194

Query: 60  P 58
           P
Sbjct: 195 P 195


>Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical
           protein T07D4.4a protein.
          Length = 1022

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = -1

Query: 213 PDSRGSTVSISLPDSARLASALEAFRHNPADGSSHHXRSAECMNQMSETAVPLV 52
           P++   T S   P  A   S  E  + NP  G+S   +     N+M  ++VP++
Sbjct: 436 PNTEQETSSSVRPYGANFNSKSEPAQKNPFGGNSSSTKPEFKENEMKNSSVPIM 489


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,968,116
Number of Sequences: 27780
Number of extensions: 249918
Number of successful extensions: 682
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)