Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1170X
         (499 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    24   0.87 
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    23   1.5  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   6.2  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   8.1  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 23.8 bits (49), Expect = 0.87
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -2

Query: 276 REVPRVPECTRGAARSLWSPQCPRGDPQCARELFLLGFLGIP 151
           R++P     +R ++ SL  P+CP G+   +    LL   G+P
Sbjct: 77  RDLPNSRCNSRESSDSLVQPRCPSGESMLSERAALL--RGVP 116


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 495 WLLEPMDIYNVNAPPTLRYKL 433
           WL  P  + N   P +LR+KL
Sbjct: 7   WLTPPHSLGNTVTPVSLRFKL 27


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = -1

Query: 286 NAAPRGPPCPRVYPRRREVPLVPAVSP 206
           N AP  PP PRV      V  V  + P
Sbjct: 728 NNAPPPPPPPRVESFAETVRTVSKIPP 754


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 5/11 (45%), Positives = 8/11 (72%)
 Frame = -3

Query: 125 GQIGAFRCICW 93
           GQ+  F+C+ W
Sbjct: 388 GQLARFKCLSW 398


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,735
Number of Sequences: 336
Number of extensions: 2225
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11735024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)