Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1170X
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo...    30   0.17 
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      26   2.7  
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    25   6.3  
SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|c...    25   6.3  
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po...    25   8.4  

>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
           component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 536

 Score = 30.3 bits (65), Expect = 0.17
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 37  ITVSLRQQPPPMKSCLSCHQQIHRN 111
           + +SL Q P P+  C+SC+Q   RN
Sbjct: 310 LEISLPQHPQPLLICMSCNQNYFRN 334


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
 Frame = -1

Query: 403 PTFKTETHYCFTAEIGRVVVRTRADSQEVLPLVKIM---FVCNAAP--RGPPCPRVYPR 242
           P  K++ +  FT E   ++VR    S  +LP  K +   F+  A+P     P P  +P+
Sbjct: 155 PLIKSDENLSFTDEDVSIIVRRLRQSNVILPNFKALSADFMLRASPVSSRTPSPTRFPK 213


>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1379

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +1

Query: 4    AAFRSALEQDFITVSLRQQPPPMKS 78
            +A R+A++ D I  ++ + PPP+K+
Sbjct: 1154 SAVRAAMKADKIFPAVHENPPPLKT 1178


>SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 303

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 466 RKCTTHLEI*VIRSQYSYNGLPTF 395
           RKC   L+  V+R  Y+Y G+P+F
Sbjct: 244 RKCKGSLD--VVRFIYNYGGIPSF 265


>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 665

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +1

Query: 46  SLRQQPPPMKSCLSCHQQIHRNAPICPLC 132
           ++ Q+ P + S +S    +H++A   PLC
Sbjct: 251 TINQKHPYISSTISYQPNVHQDAKYYPLC 279


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,800,034
Number of Sequences: 5004
Number of extensions: 31006
Number of successful extensions: 72
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)