Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1170X
(499 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0563 + 26258320-26259099 30 1.2
11_01_0522 - 4103138-4103926 29 1.6
02_05_0040 + 25341418-25341810 29 2.7
08_01_0604 - 5312558-5312622,5312826-5312917,5314128-5314245,531... 28 3.6
03_06_0175 + 32152428-32153423,32153692-32153889,32154942-321551... 28 3.6
02_05_1127 + 34292894-34293284,34293948-34295443 28 3.6
03_02_0568 + 9514715-9514944,9515174-9515300,9515529-9515684,951... 28 4.8
03_01_0408 + 3151984-3152666,3156061-3156368,3157594-3157946 28 4.8
09_06_0375 - 22653366-22657112,22657185-22658457,22658833-22659539 27 8.4
08_01_0565 + 5026308-5026730 27 8.4
>04_04_0563 + 26258320-26259099
Length = 259
Score = 29.9 bits (64), Expect = 1.2
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -1
Query: 295 FVCNAAPRGPPCPRVYPRRREVPLVPAV 212
F ++ P PP P Y +RRE LVP V
Sbjct: 13 FFSSSTPHAPPPPAGYTQRREYGLVPMV 40
>11_01_0522 - 4103138-4103926
Length = 262
Score = 29.5 bits (63), Expect = 1.6
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +3
Query: 12 QVCSRTRFHYRLAETAAAADEVVSVVPPA 98
++C T H R A +AA+ VVS VPPA
Sbjct: 54 EICPGTPKHARSASASAASAAVVSPVPPA 82
>02_05_0040 + 25341418-25341810
Length = 130
Score = 28.7 bits (61), Expect = 2.7
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +2
Query: 152 GIPRNPRRNSSRAHCGSPRGHC-GDQRDLAAPR 247
G+PR RR + R CG + C G QR APR
Sbjct: 69 GVPRR-RRAAPRRRCGGSKRRCSGPQRRRGAPR 100
>08_01_0604 -
5312558-5312622,5312826-5312917,5314128-5314245,
5314423-5314438
Length = 96
Score = 28.3 bits (60), Expect = 3.6
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +1
Query: 13 RSALEQDFITVSLRQQPPPMKSCLSCHQQIHRNAPICPLC 132
R E ++ R P C+ C QQ+H++A C C
Sbjct: 32 RKINENKLLSKKNRWTPYGNTKCVICKQQVHQDAKYCHTC 71
>03_06_0175 +
32152428-32153423,32153692-32153889,32154942-32155121,
32156224-32156481,32157310-32157381
Length = 567
Score = 28.3 bits (60), Expect = 3.6
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -2
Query: 180 LFLLGFLGIPGATLGLAERTDRRVPV 103
+FL G++G P + L+ R RR+P+
Sbjct: 31 IFLPGYIGFPADAVDLSTRLSRRIPL 56
>02_05_1127 + 34292894-34293284,34293948-34295443
Length = 628
Score = 28.3 bits (60), Expect = 3.6
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = +2
Query: 152 GIPRNPRRNSSRAHCGSPRGHCGDQRDLAAPRVHSGTRGTSRR 280
G PR+P R + RAH SPR + L R T RR
Sbjct: 49 GRPRHPPRPTRRAHPASPRASWAEAARLERRRRRRATGQPKRR 91
>03_02_0568 + 9514715-9514944,9515174-9515300,9515529-9515684,
9515765-9516102,9516191-9516329,9517083-9517152,
9517201-9517307,9517387-9517437,9517549-9517660,
9517783-9517869,9517958-9518133,9518479-9518586,
9518654-9518812,9518888-9518971,9519053-9519258,
9519565-9519666,9519768-9519877,9519963-9520114,
9520380-9520548,9520841-9520878,9521963-9522571,
9523314-9523784,9523786-9523871,9524396-9524906,
9525388-9525412,9526001-9526051,9526228-9526301,
9526412-9526534,9526667-9526738,9526924-9527020,
9527174-9527283
Length = 1649
Score = 27.9 bits (59), Expect = 4.8
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +2
Query: 152 GIPRNPRRNSSRAHCGSPRGHCGDQRDLA 238
G+PR PRR R P+ H + DLA
Sbjct: 1127 GLPRRPRRRGRRWGAKMPQRHSKNNNDLA 1155
>03_01_0408 + 3151984-3152666,3156061-3156368,3157594-3157946
Length = 447
Score = 27.9 bits (59), Expect = 4.8
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -2
Query: 270 VPRVPECTRGAARSLWSPQCPRGDPQ 193
+P++P RGA +W P P PQ
Sbjct: 115 LPQLPHLPRGAGHEVWPPHHPPPPPQ 140
>09_06_0375 - 22653366-22657112,22657185-22658457,22658833-22659539
Length = 1908
Score = 27.1 bits (57), Expect = 8.4
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = -2
Query: 282 RRREVPRVPECTRGAARSLWSPQCPRGD 199
RRR R P T GA+ S SP RGD
Sbjct: 182 RRRNGRRAPHATEGASSSGVSPHHGRGD 209
>08_01_0565 + 5026308-5026730
Length = 140
Score = 27.1 bits (57), Expect = 8.4
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = -2
Query: 294 SYATRRREVPRVPECTRGAARSLWSPQCPRGDPQCARELFLLGFLGI 154
SY RRR++ V T +A + P G P A LFL+ LG+
Sbjct: 78 SYLRRRRDLSVVGLLTAASAVTAHVPGVGGGGPAVAFVLFLMLLLGV 124
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,098,184
Number of Sequences: 37544
Number of extensions: 280256
Number of successful extensions: 979
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 978
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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