Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1170X
(499 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42857| Best HMM Match : No HMM Matches (HMM E-Value=.) 66 2e-11
SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6
SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6
SB_3936| Best HMM Match : Collagen (HMM E-Value=7.5e-24) 29 1.6
SB_25350| Best HMM Match : Collagen (HMM E-Value=0) 29 2.1
SB_21646| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_59302| Best HMM Match : Collagen (HMM E-Value=0) 29 2.8
SB_7441| Best HMM Match : Collagen (HMM E-Value=0.05) 29 2.8
SB_53873| Best HMM Match : Fibrinogen_C (HMM E-Value=0) 28 3.7
SB_12795| Best HMM Match : Collagen (HMM E-Value=0.04) 28 3.7
SB_17081| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_15078| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_50451| Best HMM Match : Avirulence (HMM E-Value=0.14) 27 6.5
SB_52196| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5
SB_29801| Best HMM Match : Collagen (HMM E-Value=3.2e-12) 27 6.5
SB_29692| Best HMM Match : ig (HMM E-Value=5.4e-12) 27 8.6
SB_10360| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_6487| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_53685| Best HMM Match : bZIP_2 (HMM E-Value=0.99) 27 8.6
SB_40962| Best HMM Match : COLFI (HMM E-Value=1.4013e-45) 27 8.6
SB_35959| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
>SB_42857| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 150
Score = 66.1 bits (154), Expect = 2e-11
Identities = 25/27 (92%), Positives = 27/27 (100%)
Frame = +1
Query: 52 RQQPPPMKSCLSCHQQIHRNAPICPLC 132
+QQPPPMK+CLSCHQQIHRNAPICPLC
Sbjct: 106 QQQPPPMKACLSCHQQIHRNAPICPLC 132
>SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1853
Score = 29.5 bits (63), Expect = 1.6
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +1
Query: 220 GPEGPRGAAGTLGDTG 267
GPEGP+G G GDTG
Sbjct: 276 GPEGPQGPPGVRGDTG 291
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1
Query: 217 RGPEGPRGAAGTLGDTGDLAAP 282
RGP+GP G GT G+ G +A P
Sbjct: 521 RGPQGPTGFPGTKGNQG-IAGP 541
>SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1705
Score = 29.5 bits (63), Expect = 1.6
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 6/31 (19%)
Frame = +1
Query: 208 GTLRGPEGPRGAAGTLG------DTGDLAAP 282
G + GP+G +GA GT+G DTGDL P
Sbjct: 50 GGVPGPKGKQGAPGTIGFPGSRGDTGDLGPP 80
>SB_3936| Best HMM Match : Collagen (HMM E-Value=7.5e-24)
Length = 270
Score = 29.5 bits (63), Expect = 1.6
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 6/31 (19%)
Frame = +1
Query: 208 GTLRGPEGPRGAAGTLG------DTGDLAAP 282
G + GP+G +GA GT+G DTGDL P
Sbjct: 50 GGVPGPKGKQGAPGTIGFPGSRGDTGDLGPP 80
>SB_25350| Best HMM Match : Collagen (HMM E-Value=0)
Length = 1112
Score = 29.1 bits (62), Expect = 2.1
Identities = 14/26 (53%), Positives = 15/26 (57%)
Frame = +1
Query: 205 AGTLRGPEGPRGAAGTLGDTGDLAAP 282
AGT GP GPRG G +G GD P
Sbjct: 884 AGT-DGPPGPRGNVGPMGPMGDPGLP 908
Score = 27.1 bits (57), Expect = 8.6
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1
Query: 220 GPEGPRGAAGTLGDTG 267
GP+GP+GA GT G G
Sbjct: 438 GPQGPQGAPGTQGPPG 453
>SB_21646| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 178
Score = 29.1 bits (62), Expect = 2.1
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +1
Query: 220 GPEGPRGAAGTLGDTG 267
GPEGP+G G GDTG
Sbjct: 77 GPEGPKGDKGDKGDTG 92
Score = 27.1 bits (57), Expect = 8.6
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 220 GPEGPRGAAGTLGDTGDLAAP 282
GPEGP+G G G G + +P
Sbjct: 53 GPEGPQGPKGDSGSPGAVGSP 73
>SB_59302| Best HMM Match : Collagen (HMM E-Value=0)
Length = 993
Score = 28.7 bits (61), Expect = 2.8
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 220 GPEGPRGAAGTLGDTGDLAAP 282
GP+GP G G LG GD+ P
Sbjct: 219 GPKGPPGTNGPLGPPGDVGPP 239
Score = 28.7 bits (61), Expect = 2.8
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 220 GPEGPRGAAGTLGDTGDLAAP 282
GP+GP G G LG GD+ P
Sbjct: 304 GPKGPPGTNGPLGPPGDVGPP 324
Score = 28.7 bits (61), Expect = 2.8
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 220 GPEGPRGAAGTLGDTGDLAAP 282
GP+GP G G LG GD+ P
Sbjct: 389 GPKGPPGTNGPLGPPGDVGPP 409
Score = 27.9 bits (59), Expect = 4.9
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +1
Query: 220 GPEGPRGAAGTLGDTGDLAAP 282
GP GP G G LG GD+ P
Sbjct: 134 GPAGPPGTNGELGPPGDVGPP 154
>SB_7441| Best HMM Match : Collagen (HMM E-Value=0.05)
Length = 510
Score = 28.7 bits (61), Expect = 2.8
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +1
Query: 217 RGPEGPRGAAGTLGDTGD 270
RGP G GAAG GD GD
Sbjct: 248 RGPPGAPGAAGVRGDRGD 265
>SB_53873| Best HMM Match : Fibrinogen_C (HMM E-Value=0)
Length = 660
Score = 28.3 bits (60), Expect = 3.7
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 220 GPEGPRGAAGTLGDTGDLAAP 282
GP+GP+G G G+ GD P
Sbjct: 128 GPQGPKGDPGVRGEKGDRGIP 148
>SB_12795| Best HMM Match : Collagen (HMM E-Value=0.04)
Length = 181
Score = 28.3 bits (60), Expect = 3.7
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 220 GPEGPRGAAGTLGDTGDLAAP 282
GP+GP+G G G+ GD P
Sbjct: 128 GPQGPKGDPGVRGEKGDRGIP 148
>SB_17081| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 202
Score = 27.9 bits (59), Expect = 4.9
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = -2
Query: 270 VPRVPECTRGAARSLWSPQCPRGDPQCARELFLLGFLGIPGATLGLAERTDRRVPVYLL 94
V +PE G A +W GD + E+ + F G G+T+ + RT++ + V L+
Sbjct: 82 VQEIPENYNGFAY-VWRGAGSFGDDNISVEMGQVAFFGNEGSTVQIKARTNQDIHVLLI 139
>SB_15078| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 783
Score = 27.9 bits (59), Expect = 4.9
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +1
Query: 220 GPEGPRGAAGTLGDTGD 270
GP+GP+GA G G GD
Sbjct: 222 GPQGPKGARGITGPKGD 238
>SB_50451| Best HMM Match : Avirulence (HMM E-Value=0.14)
Length = 1085
Score = 27.5 bits (58), Expect = 6.5
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -1
Query: 265 PCPRVYPRRREVPLVPAVSPRRSAVCSRTI 176
PCPR P ++ +P + P++ C RT+
Sbjct: 955 PCPRTLPPQQLLPCPRTLPPQQLLPCPRTL 984
Score = 27.5 bits (58), Expect = 6.5
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -1
Query: 265 PCPRVYPRRREVPLVPAVSPRRSAVCSRTI 176
PCPR P ++ +P + P++ C TI
Sbjct: 979 PCPRTLPPQQLLPCPETIPPQQLLPCPETI 1008
>SB_52196| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 428
Score = 27.5 bits (58), Expect = 6.5
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +2
Query: 194 CGSPRGHCGDQR 229
CG PRGHCG R
Sbjct: 201 CGGPRGHCGKGR 212
>SB_29801| Best HMM Match : Collagen (HMM E-Value=3.2e-12)
Length = 182
Score = 27.5 bits (58), Expect = 6.5
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +1
Query: 214 LRGPEGPRGAAGTLGDTG 267
+RGP GP+G G GD G
Sbjct: 63 IRGPPGPKGDKGEKGDAG 80
>SB_29692| Best HMM Match : ig (HMM E-Value=5.4e-12)
Length = 567
Score = 27.1 bits (57), Expect = 8.6
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 217 RGPEGPRGAAGTLGDTGDLAAP 282
RGP+GP G G +G G+ P
Sbjct: 256 RGPQGPPGPKGPIGPKGEPGPP 277
>SB_10360| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 547
Score = 27.1 bits (57), Expect = 8.6
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +1
Query: 193 LRIAAGTLRGPEGPRGAAGTLGDTG 267
+R A G LRGP+GPRG G G G
Sbjct: 371 VRGATG-LRGPQGPRGFTGKQGLRG 394
>SB_6487| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 967
Score = 27.1 bits (57), Expect = 8.6
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +1
Query: 202 AAGTLRGPEGPRGAAGTLGDTGD 270
A + GP GPRG G+ G GD
Sbjct: 816 AVSKMEGPMGPRGFNGSQGPKGD 838
>SB_53685| Best HMM Match : bZIP_2 (HMM E-Value=0.99)
Length = 716
Score = 27.1 bits (57), Expect = 8.6
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +3
Query: 66 ADEVVSVVPPADTPERA 116
AD++V V+PP +TPE A
Sbjct: 452 ADQIVRVIPPDNTPEGA 468
>SB_40962| Best HMM Match : COLFI (HMM E-Value=1.4013e-45)
Length = 577
Score = 27.1 bits (57), Expect = 8.6
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 217 RGPEGPRGAAGTLGDTGDLAAP 282
+GP GP+GA G +G G P
Sbjct: 37 QGPFGPKGAGGEMGSKGPPGVP 58
>SB_35959| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1136
Score = 27.1 bits (57), Expect = 8.6
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +3
Query: 57 AAAADEVVSVVPPADTP 107
A AD++V V+PP DTP
Sbjct: 1012 ARLADQIVRVIPPDDTP 1028
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,048,669
Number of Sequences: 59808
Number of extensions: 284877
Number of successful extensions: 1377
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1354
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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