Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1170X
         (499 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskel...    29   0.067
AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha ...    27   0.27 
AF283269-1|AAG15374.1|  114|Anopheles gambiae ribosomal protein ...    26   0.62 
AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha ...    26   0.82 
AJ439060-17|CAD27768.1|  568|Anopheles gambiae putative chitin b...    24   2.5  
CR954256-9|CAJ14150.1|  872|Anopheles gambiae putative calcium/c...    24   3.3  
AY135184-1|AAN17505.1| 1009|Anopheles gambiae laccase 1 protein.       24   3.3  
AJ441131-7|CAD29636.1| 1977|Anopheles gambiae putative Tyr/Ser/T...    23   5.8  
AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    23   5.8  
AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcript...    23   5.8  
AY146748-1|AAO12063.1|  279|Anopheles gambiae odorant-binding pr...    23   7.6  
AJ697727-1|CAG26920.1|  285|Anopheles gambiae putative odorant-b...    23   7.6  
AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcript...    23   7.6  

>CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative
           cytoskeletal structural protein protein.
          Length = 1645

 Score = 29.5 bits (63), Expect = 0.067
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -1

Query: 265 PCPRVYPRRREVPLVPAVSPRRSAVCS 185
           PCP + PR  EVP  P      S+ CS
Sbjct: 107 PCPNLIPRPAEVPTTPEHKSAASSSCS 133


>AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha 1
           chain protein.
          Length = 1024

 Score = 27.5 bits (58), Expect = 0.27
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +1

Query: 214 LRGPEGPRGAAGTLGDTG 267
           LRGP+G RG  G  GD G
Sbjct: 114 LRGPKGERGGMGDRGDPG 131



 Score = 26.6 bits (56), Expect = 0.47
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 217 RGPEGPRGAAGTLGDTGD 270
           RGP GP G  G  G+ GD
Sbjct: 581 RGPSGPSGPLGPQGEKGD 598



 Score = 26.2 bits (55), Expect = 0.62
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 214 LRGPEGPRGAAGTLGDTGDL 273
           +RGP+G +G  G  GD G++
Sbjct: 234 VRGPQGVKGEPGEKGDRGEI 253



 Score = 25.8 bits (54), Expect = 0.82
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 220 GPEGPRGAAGTLGDTGDLAAP 282
           G  GP+G  G +GD GD   P
Sbjct: 113 GLRGPKGERGGMGDRGDPGLP 133



 Score = 25.8 bits (54), Expect = 0.82
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +1

Query: 220 GPEGPRGAAGTLGDTGD 270
           GP GP G  G  GD GD
Sbjct: 585 GPSGPLGPQGEKGDRGD 601



 Score = 25.8 bits (54), Expect = 0.82
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 220 GPEGPRGAAGTLGDTGDLAAP 282
           GP GP+G  G  GD+G +  P
Sbjct: 588 GPLGPQGEKGDRGDSGLMGRP 608



 Score = 25.4 bits (53), Expect = 1.1
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = +1

Query: 214 LRGPEGPRGAAGTLGDTGDLAAP 282
           LRG EG RG  G  GD G    P
Sbjct: 753 LRGFEGARGLQGLRGDVGPEGRP 775



 Score = 23.8 bits (49), Expect = 3.3
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 214 LRGPEGPRGAAGTLG 258
           L GP GP+G AG  G
Sbjct: 333 LEGPSGPKGDAGVPG 347



 Score = 23.4 bits (48), Expect = 4.4
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +1

Query: 220 GPEGPRGAAGTLGDTGDLAAP 282
           GPEGP G  G   + G    P
Sbjct: 299 GPEGPPGEPGAASEKGQNGEP 319



 Score = 23.4 bits (48), Expect = 4.4
 Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
 Frame = +1

Query: 217 RGPEGPRGAAGTLGDTG--DLAAP 282
           +GP GP G  G  GD G   LA P
Sbjct: 715 KGPPGPPGFNGPKGDKGLPGLAGP 738


>AF283269-1|AAG15374.1|  114|Anopheles gambiae ribosomal protein S26
           protein.
          Length = 114

 Score = 26.2 bits (55), Expect = 0.62
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -1

Query: 427 SQYSYNGLPTFKTETHYCFTAEIGRVVVRTRA 332
           S YS   LP    + HYC +  I   VVR R+
Sbjct: 56  SVYSSYVLPKLYAKLHYCVSCAIHSKVVRNRS 87


>AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha 1
           chain precursor protein.
          Length = 801

 Score = 25.8 bits (54), Expect = 0.82
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +1

Query: 214 LRGPEGPRGAAGTLGDTGDLAAP 282
           LRG  GP+G  G LG  G    P
Sbjct: 626 LRGEPGPKGEPGLLGPPGPSGEP 648



 Score = 23.4 bits (48), Expect = 4.4
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 220 GPEGPRGAAGTLGDTG 267
           GP+GPRG  G  G  G
Sbjct: 414 GPKGPRGYEGPQGPKG 429



 Score = 23.4 bits (48), Expect = 4.4
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 220 GPEGPRGAAGTLGDTGD 270
           GP+GP+G  G  G+ G+
Sbjct: 423 GPQGPKGMDGFDGEKGE 439



 Score = 23.4 bits (48), Expect = 4.4
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 220 GPEGPRGAAGTLGDTG 267
           GP+GPRG  G  G  G
Sbjct: 477 GPQGPRGYPGQPGPEG 492


>AJ439060-17|CAD27768.1|  568|Anopheles gambiae putative chitin
           binding protein protein.
          Length = 568

 Score = 24.2 bits (50), Expect = 2.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 193 LRIAAGTLRGPEGPRGAAGTL 255
           +R+    LRGPE  R AAG L
Sbjct: 301 IRVRQQELRGPEAVREAAGRL 321


>CR954256-9|CAJ14150.1|  872|Anopheles gambiae putative
           calcium/calmodulin-dependentprotein kinase, CAKI
           protein.
          Length = 872

 Score = 23.8 bits (49), Expect = 3.3
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = -3

Query: 95  WWHDRHDFIGGGCCL 51
           WW  RHD  GG   L
Sbjct: 607 WWQARHDAAGGSAGL 621


>AY135184-1|AAN17505.1| 1009|Anopheles gambiae laccase 1 protein.
          Length = 1009

 Score = 23.8 bits (49), Expect = 3.3
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -1

Query: 382  HYCFTAEIGRVVVRTRADSQEVLP 311
            H  F AEIG  +V    DS E+LP
Sbjct: 939  HIEFHAEIGMSLVLKVGDSSEMLP 962


>AJ441131-7|CAD29636.1| 1977|Anopheles gambiae putative Tyr/Ser/Thr
           phosphatase protein.
          Length = 1977

 Score = 23.0 bits (47), Expect = 5.8
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +2

Query: 152 GIPRNPRRNSSRAHCGSPRGHCGDQRDLAA 241
           G P NP  +SS +    P G  G    LAA
Sbjct: 799 GTPDNPLSSSSTSSSLYPNGSIGGVNSLAA 828


>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
            differentiation regulator protein.
          Length = 1283

 Score = 23.0 bits (47), Expect = 5.8
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +3

Query: 51   ETAAAADEVVSVVPPADTPERAD 119
            +TA A DEV    PPA    + D
Sbjct: 1201 DTATALDEVALPAPPAPPTSKRD 1223


>AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1009

 Score = 23.0 bits (47), Expect = 5.8
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -2

Query: 426 LSIVTTACRPLKLKRITASRQK*AGWW 346
           + I+ TAC     KR   +  K A WW
Sbjct: 251 MRILVTACNATMTKRKRYTPNKSAFWW 277


>AY146748-1|AAO12063.1|  279|Anopheles gambiae odorant-binding
           protein AgamOBP41 protein.
          Length = 279

 Score = 22.6 bits (46), Expect = 7.6
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -2

Query: 495 WLLEPMDIYNVNAPPTLRYKL*GLSIVTTAC 403
           ++ +P D YNVN   T   +L  L +    C
Sbjct: 98  FVTDPADAYNVNRTETCLQELPALELNAEKC 128


>AJ697727-1|CAG26920.1|  285|Anopheles gambiae putative
           odorant-binding protein OBPjj17 protein.
          Length = 285

 Score = 22.6 bits (46), Expect = 7.6
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -3

Query: 368 GRNRQGGGTYPRGLTR 321
           G+  Q GG YPRG  R
Sbjct: 253 GQYDQRGGNYPRGTER 268


>AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1168

 Score = 22.6 bits (46), Expect = 7.6
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +1

Query: 37  ITVSLRQQPPPMK 75
           +TV+LRQQP P +
Sbjct: 450 LTVALRQQPEPFR 462


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 499,333
Number of Sequences: 2352
Number of extensions: 9154
Number of successful extensions: 46
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 44400195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)