Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1170X
(499 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70213-8|CAA94170.4| 253|Caenorhabditis elegans Hypothetical pr... 55 2e-08
Z70213-2|CAA94171.1| 304|Caenorhabditis elegans Hypothetical pr... 36 0.012
AC024811-5|AAF60775.1| 285|Caenorhabditis elegans Collagen prot... 32 0.27
Z46791-3|CAA86757.1| 323|Caenorhabditis elegans Hypothetical pr... 31 0.46
Z81567-3|CAB04587.1| 301|Caenorhabditis elegans Hypothetical pr... 30 1.1
Z71262-8|CAA95812.1| 302|Caenorhabditis elegans Hypothetical pr... 30 1.1
U80451-9|AAB37843.1| 285|Caenorhabditis elegans Collagen protei... 30 1.1
AF067616-11|AAC19194.2| 627|Caenorhabditis elegans Collagen pro... 30 1.1
AF043700-2|AAB97570.1| 283|Caenorhabditis elegans Collagen prot... 30 1.1
Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical pr... 29 1.4
Z82268-5|CAB05195.1| 304|Caenorhabditis elegans Hypothetical pr... 29 1.4
Z79694-6|CAB01958.1| 316|Caenorhabditis elegans Hypothetical pr... 29 1.4
Z79694-5|CAB01961.1| 316|Caenorhabditis elegans Hypothetical pr... 29 1.4
Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical pr... 29 1.4
AF067607-9|AAF98609.1| 460|Caenorhabditis elegans Collagen prot... 29 1.4
Z83228-2|CAB05733.1| 370|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z81138-4|CAB03474.1| 304|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z81138-3|CAB63321.1| 304|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z81138-1|CAB03475.1| 304|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z70756-6|CAA94792.1| 290|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z70207-1|CAA94128.1| 291|Caenorhabditis elegans Hypothetical pr... 29 2.5
U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protei... 29 2.5
AF022985-12|AAB69959.1| 319|Caenorhabditis elegans Collagen pro... 29 2.5
AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen pro... 29 2.5
AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen prot... 29 2.5
Z70756-4|CAA94788.1| 290|Caenorhabditis elegans Hypothetical pr... 28 3.3
Z70682-4|CAA94581.1| 299|Caenorhabditis elegans Hypothetical pr... 28 3.3
Z46791-4|CAA86758.1| 317|Caenorhabditis elegans Hypothetical pr... 28 3.3
Z46791-2|CAA86756.1| 283|Caenorhabditis elegans Hypothetical pr... 28 3.3
U70849-7|AAF99925.2| 332|Caenorhabditis elegans Collagen protei... 28 3.3
U41624-5|AAF99941.1| 314|Caenorhabditis elegans Collagen protei... 28 3.3
Z67738-4|CAJ43444.1| 279|Caenorhabditis elegans Hypothetical pr... 28 4.3
Z67738-3|CAA91544.2| 332|Caenorhabditis elegans Hypothetical pr... 28 4.3
AF040660-2|AAC71147.1| 302|Caenorhabditis elegans Collagen prot... 28 4.3
AC084154-1|AAK29872.1| 65|Caenorhabditis elegans Hypothetical ... 28 4.3
Z81479-3|CAB03942.1| 283|Caenorhabditis elegans Hypothetical pr... 27 5.7
Z81479-2|CAB03941.1| 283|Caenorhabditis elegans Hypothetical pr... 27 5.7
Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical pr... 27 5.7
Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical pr... 27 5.7
Z72509-5|CAA96649.1| 294|Caenorhabditis elegans Hypothetical pr... 27 5.7
Z71178-1|CAA94874.1| 297|Caenorhabditis elegans Hypothetical pr... 27 5.7
Z70681-1|CAA94580.1| 307|Caenorhabditis elegans Hypothetical pr... 27 5.7
Z70307-10|CAA94328.1| 276|Caenorhabditis elegans Hypothetical p... 27 5.7
Z66498-1|CAA91290.1| 304|Caenorhabditis elegans Hypothetical pr... 27 5.7
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen... 27 5.7
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen... 27 5.7
V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caeno... 27 5.7
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ... 27 5.7
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ... 27 5.7
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll... 27 5.7
J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.ele... 27 5.7
AF043703-3|AAK21500.1| 357|Caenorhabditis elegans Calcium chann... 27 5.7
AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen prot... 27 5.7
Z68219-2|CAA92476.1| 300|Caenorhabditis elegans Hypothetical pr... 27 7.6
Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical pr... 27 7.6
U41748-3|AAA83336.1| 452|Caenorhabditis elegans Dumpy : shorter... 27 7.6
U39745-4|AAA80446.1| 325|Caenorhabditis elegans Collagen protei... 27 7.6
L23651-12|AAA27958.1| 305|Caenorhabditis elegans Collagen prote... 27 7.6
AF040642-7|AAB94952.1| 329|Caenorhabditis elegans Collagen prot... 27 7.6
AF016687-1|AAC48094.2| 315|Caenorhabditis elegans Dumpy : short... 27 7.6
Z81503-1|CAB04111.1| 305|Caenorhabditis elegans Hypothetical pr... 27 10.0
Z81104-3|CAD89749.1| 660|Caenorhabditis elegans Hypothetical pr... 27 10.0
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 27 10.0
Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical pr... 27 10.0
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 27 10.0
U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter... 27 10.0
U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protei... 27 10.0
U50312-9|AAA92325.1| 294|Caenorhabditis elegans Collagen protei... 27 10.0
U50312-7|AAA92323.2| 306|Caenorhabditis elegans Collagen protei... 27 10.0
U50191-2|AAK31556.2| 335|Caenorhabditis elegans Dumpy : shorter... 27 10.0
U50191-1|AAO38600.2| 372|Caenorhabditis elegans Dumpy : shorter... 27 10.0
U41553-3|AAA83293.1| 289|Caenorhabditis elegans Collagen protei... 27 10.0
U12966-7|AAK84534.1| 352|Caenorhabditis elegans Dumpy : shorter... 27 10.0
M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen ... 27 10.0
M25481-1|AAA27987.1| 283|Caenorhabditis elegans collagen protein. 27 10.0
L12692-1|AAA17395.2| 356|Caenorhabditis elegans collagen protein. 27 10.0
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 27 10.0
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 27 10.0
AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular col... 27 10.0
AF068713-4|AAC17795.2| 398|Caenorhabditis elegans Hypothetical ... 27 10.0
AF047652-1|AAO44912.1| 294|Caenorhabditis elegans Collagen prot... 27 10.0
AF025458-5|AAB70974.1| 298|Caenorhabditis elegans Squat protein... 27 10.0
>Z70213-8|CAA94170.4| 253|Caenorhabditis elegans Hypothetical
protein ZK930.3a protein.
Length = 253
Score = 55.2 bits (127), Expect = 2e-08
Identities = 23/44 (52%), Positives = 31/44 (70%)
Frame = +1
Query: 1 PAAFRSALEQDFITVSLRQQPPPMKSCLSCHQQIHRNAPICPLC 132
P +A++ + V+ Q PPMK+C SC+QQIHRNAPICP+C
Sbjct: 194 PPHMAAAMQHHQLKVT-DHQSPPMKTCQSCYQQIHRNAPICPMC 236
>Z70213-2|CAA94171.1| 304|Caenorhabditis elegans Hypothetical
protein ZK930.2 protein.
Length = 304
Score = 36.3 bits (80), Expect = 0.012
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +1
Query: 70 MKSCLSCHQQIHRNAPICPLC 132
MK C +C IHRNAP CP+C
Sbjct: 258 MKVCENCGANIHRNAPTCPVC 278
>AC024811-5|AAF60775.1| 285|Caenorhabditis elegans Collagen protein
48 protein.
Length = 285
Score = 31.9 bits (69), Expect = 0.27
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = +1
Query: 217 RGPEGPRGAAGTLGDTGDLAAP 282
RGP GP G AGT G GD +P
Sbjct: 249 RGPPGPPGQAGTPGSPGDAGSP 270
>Z46791-3|CAA86757.1| 323|Caenorhabditis elegans Hypothetical
protein C09G5.4 protein.
Length = 323
Score = 31.1 bits (67), Expect = 0.46
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +1
Query: 208 GTLRGPEGPRGAAGTLGDTGDLAAP 282
G +GP GPRG AG G G + AP
Sbjct: 164 GGSQGPAGPRGPAGDAGAPGQVGAP 188
>Z81567-3|CAB04587.1| 301|Caenorhabditis elegans Hypothetical
protein K08C9.4 protein.
Length = 301
Score = 29.9 bits (64), Expect = 1.1
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +1
Query: 217 RGPEGPRGAAGTLGDTGDLAAP 282
+GPEGP GAAG G G+ AP
Sbjct: 210 QGPEGPAGAAGQDGAPGEDGAP 231
>Z71262-8|CAA95812.1| 302|Caenorhabditis elegans Hypothetical
protein F22D6.10 protein.
Length = 302
Score = 29.9 bits (64), Expect = 1.1
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +1
Query: 217 RGPEGPRGAAGTLGDTGD 270
RGPEGPRG G +G G+
Sbjct: 219 RGPEGPRGQPGNMGRPGE 236
>U80451-9|AAB37843.1| 285|Caenorhabditis elegans Collagen protein
73 protein.
Length = 285
Score = 29.9 bits (64), Expect = 1.1
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +1
Query: 220 GPEGPRGAAGTLGDTGDLAAPRCIRT 297
GP+GP G AG G G AP +RT
Sbjct: 180 GPQGPPGTAGNDGTPGQPGAPGQVRT 205
>AF067616-11|AAC19194.2| 627|Caenorhabditis elegans Collagen
protein 99 protein.
Length = 627
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 205 AGTLRGPEGPRGAAGTLGDTGDLAAP 282
+G+ GP GP G G G+ GDL P
Sbjct: 472 SGSQSGPRGPPGLPGPPGEKGDLGPP 497
Score = 28.3 bits (60), Expect = 3.3
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 217 RGPEGPRGAAGTLGDTGDLAAP 282
RGP+G G +G GD GD+ P
Sbjct: 439 RGPQGLPGHSGERGDRGDIGPP 460
>AF043700-2|AAB97570.1| 283|Caenorhabditis elegans Collagen protein
49 protein.
Length = 283
Score = 29.9 bits (64), Expect = 1.1
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +1
Query: 217 RGPEGPRGAAGTLGDTG 267
+GP GPRGA G G+TG
Sbjct: 161 KGPSGPRGALGDQGETG 177
Score = 26.6 bits (56), Expect = 10.0
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +1
Query: 217 RGPEGPRGAAGTLGDTGD 270
RG +GP G G LGD G+
Sbjct: 158 RGDKGPSGPRGALGDQGE 175
>Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical
protein H06A10.2 protein.
Length = 305
Score = 29.5 bits (63), Expect = 1.4
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 220 GPEGPRGAAGTLGDTGDLAAP 282
GP+GP G AG G+ G AAP
Sbjct: 164 GPDGPAGPAGPDGEAGSPAAP 184
>Z82268-5|CAB05195.1| 304|Caenorhabditis elegans Hypothetical
protein F52B11.4 protein.
Length = 304
Score = 29.5 bits (63), Expect = 1.4
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 220 GPEGPRGAAGTLGDTGDLAAP 282
GP GP+GA+G G+ G AP
Sbjct: 186 GPAGPKGASGAPGNPGQAGAP 206
Score = 27.9 bits (59), Expect = 4.3
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +1
Query: 223 PEGPRGAAGTLGDTGDLAAP 282
P+GP GA G G GD AP
Sbjct: 154 PQGPAGAPGAPGPQGDAGAP 173
>Z79694-6|CAB01958.1| 316|Caenorhabditis elegans Hypothetical
protein C15A11.6 protein.
Length = 316
Score = 29.5 bits (63), Expect = 1.4
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +1
Query: 202 AAGTLRGPEGPRGAAGTLGDTGDLAAP 282
A G +GP GP G AG+ G G AP
Sbjct: 163 AQGGGQGPPGPPGPAGSAGSPGQAGAP 189
>Z79694-5|CAB01961.1| 316|Caenorhabditis elegans Hypothetical
protein C15A11.5 protein.
Length = 316
Score = 29.5 bits (63), Expect = 1.4
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +1
Query: 202 AAGTLRGPEGPRGAAGTLGDTGDLAAP 282
A G +GP GP G AG+ G G AP
Sbjct: 163 AQGGGQGPPGPPGPAGSAGSPGQAGAP 189
>Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical
protein F54B11.2 protein.
Length = 304
Score = 29.5 bits (63), Expect = 1.4
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 220 GPEGPRGAAGTLGDTGDLAAP 282
GP+GP G AG G+ G AAP
Sbjct: 163 GPDGPAGPAGPDGEAGSPAAP 183
>AF067607-9|AAF98609.1| 460|Caenorhabditis elegans Collagen protein
102 protein.
Length = 460
Score = 29.5 bits (63), Expect = 1.4
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +1
Query: 205 AGTLRGPEGPRGAAGTLGDTGDLAAP 282
AG+ GPEGP G G G G+ AP
Sbjct: 228 AGSGPGPEGPAGPPGPNGKDGEAGAP 253
Score = 26.6 bits (56), Expect = 10.0
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +1
Query: 220 GPEGPRGAAGTLGDTG 267
GPEGP G AG G+ G
Sbjct: 147 GPEGPAGPAGPAGNAG 162
>Z83228-2|CAB05733.1| 370|Caenorhabditis elegans Hypothetical
protein F52F12.2 protein.
Length = 370
Score = 28.7 bits (61), Expect = 2.5
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +1
Query: 220 GPEGPRGAAGTLGDTGD 270
GPEGP G AG +GD +
Sbjct: 233 GPEGPEGPAGNIGDIAE 249
>Z81138-4|CAB03474.1| 304|Caenorhabditis elegans Hypothetical
protein W05B2.6 protein.
Length = 304
Score = 28.7 bits (61), Expect = 2.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 220 GPEGPRGAAGTLGDTGDLAAP 282
GP GP+GA G G+ G AP
Sbjct: 186 GPAGPKGAPGAPGNPGQAGAP 206
Score = 27.9 bits (59), Expect = 4.3
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +1
Query: 223 PEGPRGAAGTLGDTGDLAAP 282
P+GP GA G G GD AP
Sbjct: 154 PQGPAGAPGAPGPQGDAGAP 173
>Z81138-3|CAB63321.1| 304|Caenorhabditis elegans Hypothetical
protein W05B2.5 protein.
Length = 304
Score = 28.7 bits (61), Expect = 2.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 220 GPEGPRGAAGTLGDTGDLAAP 282
GP GP+GA G G+ G AP
Sbjct: 186 GPAGPKGAPGAPGNPGQAGAP 206
Score = 27.9 bits (59), Expect = 4.3
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +1
Query: 223 PEGPRGAAGTLGDTGDLAAP 282
P+GP GA G G GD AP
Sbjct: 154 PQGPAGAPGAPGPQGDAGAP 173
>Z81138-1|CAB03475.1| 304|Caenorhabditis elegans Hypothetical
protein W05B2.1 protein.
Length = 304
Score = 28.7 bits (61), Expect = 2.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 220 GPEGPRGAAGTLGDTGDLAAP 282
GP GP+GA G G+ G AP
Sbjct: 186 GPAGPKGAPGAPGNPGQAGAP 206
Score = 27.9 bits (59), Expect = 4.3
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +1
Query: 223 PEGPRGAAGTLGDTGDLAAP 282
P+GP GA G G GD AP
Sbjct: 154 PQGPAGAPGAPGPQGDAGAP 173
>Z70756-6|CAA94792.1| 290|Caenorhabditis elegans Hypothetical
protein T06E4.6 protein.
Length = 290
Score = 28.7 bits (61), Expect = 2.5
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +1
Query: 202 AAGTLRGPEGPRGAAGTLGDTGDLAAP 282
A G GP GP+G AG G G AP
Sbjct: 158 AVGEGPGPAGPQGPAGDAGAPGQAGAP 184
Score = 26.6 bits (56), Expect = 10.0
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 220 GPEGPRGAAGTLGDTGDLAAP 282
GP+GP G G G +G AP
Sbjct: 208 GPQGPAGGPGQPGQSGGAGAP 228
>Z70207-1|CAA94128.1| 291|Caenorhabditis elegans Hypothetical
protein F15A2.1 protein.
Length = 291
Score = 28.7 bits (61), Expect = 2.5
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +1
Query: 220 GPEGPRGAAGTLGDTG 267
GPEGP+GA GT G G
Sbjct: 227 GPEGPKGAPGTPGKNG 242
>U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protein
43 protein.
Length = 303
Score = 28.7 bits (61), Expect = 2.5
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +1
Query: 217 RGPEGPRGAAGTLGDTGDLAAP 282
RGP GP G AG G GD P
Sbjct: 190 RGPPGPPGEAGQPGPQGDAGTP 211
Score = 26.6 bits (56), Expect = 10.0
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +1
Query: 217 RGPEGPRGAAGTLGDTGDLAAP 282
+GP GP G G GD G+ P
Sbjct: 154 QGPPGPPGPPGAPGDPGEAGTP 175
>AF022985-12|AAB69959.1| 319|Caenorhabditis elegans Collagen
protein 143 protein.
Length = 319
Score = 28.7 bits (61), Expect = 2.5
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +1
Query: 217 RGPEGPRGAAGTLGDTGDLAAP 282
RGP GPRG AG G G P
Sbjct: 166 RGPPGPRGPAGDAGSPGQPGHP 187
>AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen
protein 142 protein.
Length = 325
Score = 28.7 bits (61), Expect = 2.5
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +1
Query: 217 RGPEGPRGAAGTLGDTGDLAAP 282
RGP GPRG AG G G P
Sbjct: 166 RGPPGPRGPAGDAGSPGQPGHP 187
>AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen
protein.
Length = 303
Score = 28.7 bits (61), Expect = 2.5
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +1
Query: 217 RGPEGPRGAAGTLGDTGDLAAP 282
RGP GP G AG G GD P
Sbjct: 190 RGPPGPPGEAGQPGPQGDAGTP 211
Score = 26.6 bits (56), Expect = 10.0
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +1
Query: 217 RGPEGPRGAAGTLGDTGDLAAP 282
+GP GP G G GD G+ P
Sbjct: 154 QGPPGPPGPPGAPGDPGEAGTP 175
>Z70756-4|CAA94788.1| 290|Caenorhabditis elegans Hypothetical
protein T06E4.4 protein.
Length = 290
Score = 28.3 bits (60), Expect = 3.3
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +1
Query: 202 AAGTLRGPEGPRGAAGTLGDTGDLAAP 282
A G GP GP+G AG G G AP
Sbjct: 158 AVGGGPGPAGPQGPAGDAGAPGQAGAP 184
Score = 26.6 bits (56), Expect = 10.0
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 220 GPEGPRGAAGTLGDTGDLAAP 282
GP+GP G G G +G AP
Sbjct: 208 GPQGPAGGPGQPGQSGGAGAP 228
>Z70682-4|CAA94581.1| 299|Caenorhabditis elegans Hypothetical
protein F08G5.4 protein.
Length = 299
Score = 28.3 bits (60), Expect = 3.3
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +1
Query: 220 GPEGPRGAAGTLGDTGDLAAP 282
GP GP G AG GD G AP
Sbjct: 175 GPAGPEGDAGAPGDAGAPGAP 195
>Z46791-4|CAA86758.1| 317|Caenorhabditis elegans Hypothetical
protein C09G5.5 protein.
Length = 317
Score = 28.3 bits (60), Expect = 3.3
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +1
Query: 202 AAGTLRGPEGPRGAAGTLGDTGDLAAP 282
A G +GP GP G AG G G AP
Sbjct: 161 AHGGGQGPPGPPGPAGDAGSPGQAGAP 187
>Z46791-2|CAA86756.1| 283|Caenorhabditis elegans Hypothetical
protein C09G5.3 protein.
Length = 283
Score = 28.3 bits (60), Expect = 3.3
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +1
Query: 217 RGPEGPRGAAGTLGDTGDLAAP 282
RGP GP+G G GD G+ P
Sbjct: 141 RGPPGPQGEEGPSGDVGEDGEP 162
>U70849-7|AAF99925.2| 332|Caenorhabditis elegans Collagen protein
111 protein.
Length = 332
Score = 28.3 bits (60), Expect = 3.3
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 220 GPEGPRGAAGTLGDTG 267
GP GPRGA G++G+ G
Sbjct: 148 GPPGPRGAPGSVGEPG 163
>U41624-5|AAF99941.1| 314|Caenorhabditis elegans Collagen protein
174 protein.
Length = 314
Score = 28.3 bits (60), Expect = 3.3
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 220 GPEGPRGAAGTLGDTGDLAAP 282
GP GP G+AG G +G+ AP
Sbjct: 173 GPPGPAGSAGVKGPSGNPGAP 193
>Z67738-4|CAJ43444.1| 279|Caenorhabditis elegans Hypothetical
protein W03G11.1b protein.
Length = 279
Score = 27.9 bits (59), Expect = 4.3
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 217 RGPEGPRGAAGTLGDTGDLAAP 282
+GP+GP GAAG G G AP
Sbjct: 213 QGPKGPPGAAGRPGRDGQPGAP 234
>Z67738-3|CAA91544.2| 332|Caenorhabditis elegans Hypothetical
protein W03G11.1a protein.
Length = 332
Score = 27.9 bits (59), Expect = 4.3
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 217 RGPEGPRGAAGTLGDTGDLAAP 282
+GP+GP GAAG G G AP
Sbjct: 266 QGPKGPPGAAGRPGRDGQPGAP 287
>AF040660-2|AAC71147.1| 302|Caenorhabditis elegans Collagen protein
88 protein.
Length = 302
Score = 27.9 bits (59), Expect = 4.3
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +1
Query: 217 RGPEGPRGAAGTLGDTGDLAAP 282
+GP+GP GA G G G AP
Sbjct: 147 QGPDGPAGAPGADGQAGSPGAP 168
>AC084154-1|AAK29872.1| 65|Caenorhabditis elegans Hypothetical
protein Y22D7AR.3 protein.
Length = 65
Score = 27.9 bits (59), Expect = 4.3
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = -3
Query: 98 CWWHDRHDFIGGGCCLSETVMKSCSR 21
CW H+ +GG C S ++ C+R
Sbjct: 12 CWLAQLHEMLGGICSTSPRIIDYCTR 37
>Z81479-3|CAB03942.1| 283|Caenorhabditis elegans Hypothetical
protein C34F6.3 protein.
Length = 283
Score = 27.5 bits (58), Expect = 5.7
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +1
Query: 208 GTLRGPEGPRGAAGTLGDTGDLAAP 282
G RGP GPRG G G G+ P
Sbjct: 171 GGNRGPPGPRGPPGEAGPDGEGGRP 195
>Z81479-2|CAB03941.1| 283|Caenorhabditis elegans Hypothetical
protein C34F6.2 protein.
Length = 283
Score = 27.5 bits (58), Expect = 5.7
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +1
Query: 208 GTLRGPEGPRGAAGTLGDTGDLAAP 282
G RGP GPRG G G G+ P
Sbjct: 171 GGNRGPPGPRGPPGEAGPDGEGGRP 195
>Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical
protein F23H12.4 protein.
Length = 301
Score = 27.5 bits (58), Expect = 5.7
Identities = 20/48 (41%), Positives = 20/48 (41%)
Frame = +1
Query: 214 LRGPEGPRGAAGTLGDTGDLAAPRCIRT*FLLVVGPLVSPRGYVPPPC 357
L GP GP GA G G G AP T V P P PPPC
Sbjct: 103 LPGPPGPAGAPGKPGKPGRPGAPGTPGTPGKPPVAP-CEPT--TPPPC 147
Score = 27.5 bits (58), Expect = 5.7
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +1
Query: 217 RGPEGPRGAAGTLGDTGDLAAP 282
RGP GP G AG G G+ P
Sbjct: 188 RGPPGPAGEAGAPGPAGEPGTP 209
Score = 26.6 bits (56), Expect = 10.0
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +1
Query: 217 RGPEGPRGAAGTLGDTGDLAAP 282
+GP GP G G GD G+ P
Sbjct: 152 QGPPGPPGPPGAPGDPGEAGTP 173
>Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical
protein T10B10.1 protein.
Length = 428
Score = 27.5 bits (58), Expect = 5.7
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 199 IAAGTLRGPEGPRGAAGTLGDTGDLAAP 282
I G ++ PEGP G G GD+G P
Sbjct: 132 IPGGCIKCPEGPAGPPGPDGDSGPEGFP 159
>Z72509-5|CAA96649.1| 294|Caenorhabditis elegans Hypothetical
protein F32G8.5 protein.
Length = 294
Score = 27.5 bits (58), Expect = 5.7
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +1
Query: 220 GPEGPRGAAGTLGDTG 267
GP GP GAAGT G+ G
Sbjct: 94 GPPGPPGAAGTNGEDG 109
>Z71178-1|CAA94874.1| 297|Caenorhabditis elegans Hypothetical
protein B0024.1 protein.
Length = 297
Score = 27.5 bits (58), Expect = 5.7
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -1
Query: 277 PRGPPCPRVYPRRREVPLVP 218
PRGPP P +P +R +P +P
Sbjct: 105 PRGPPGPPGHPGQRGIPGIP 124
>Z70681-1|CAA94580.1| 307|Caenorhabditis elegans Hypothetical
protein C30F2.1 protein.
Length = 307
Score = 27.5 bits (58), Expect = 5.7
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = +1
Query: 223 PEGPRGAAGTLGDTGDLAAP--RCIRT*FLLVVGPLVSPRG 339
P GP G G +GD G+ AP R + FL + L P G
Sbjct: 157 PRGPPGRRGRMGDDGEPGAPGRRGLSGTFLTGIKKLRGPPG 197
>Z70307-10|CAA94328.1| 276|Caenorhabditis elegans Hypothetical
protein C39E9.9 protein.
Length = 276
Score = 27.5 bits (58), Expect = 5.7
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +1
Query: 220 GPEGPRGAAGTLGDTGDLAAP 282
G EGP GAAG G+ GD P
Sbjct: 229 GEEGPPGAAGLDGERGDEGEP 249
>Z66498-1|CAA91290.1| 304|Caenorhabditis elegans Hypothetical
protein M195.1 protein.
Length = 304
Score = 27.5 bits (58), Expect = 5.7
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +1
Query: 220 GPEGPRGAAGTLGDTGDLAAP 282
GP GP+GA GT G G P
Sbjct: 233 GPPGPQGAPGTDGQPGSAGQP 253
>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1759
Score = 27.5 bits (58), Expect = 5.7
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +1
Query: 214 LRGPEGPRGAAGTLGDTGDLAAP 282
LRGP+GP G G G G+ P
Sbjct: 1047 LRGPQGPSGLPGVPGFKGETGLP 1069
>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1758
Score = 27.5 bits (58), Expect = 5.7
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +1
Query: 214 LRGPEGPRGAAGTLGDTGDLAAP 282
LRGP+GP G G G G+ P
Sbjct: 1046 LRGPQGPSGLPGVPGFKGETGLP 1068
>V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-1 coding for a collagen.
).
Length = 296
Score = 27.5 bits (58), Expect = 5.7
Identities = 20/48 (41%), Positives = 20/48 (41%)
Frame = +1
Query: 214 LRGPEGPRGAAGTLGDTGDLAAPRCIRT*FLLVVGPLVSPRGYVPPPC 357
L GP GP GA G G G AP T V P P PPPC
Sbjct: 98 LPGPPGPAGAPGKPGKPGRPGAPGTPGTPGKPPVAP-CEPT--TPPPC 142
Score = 27.5 bits (58), Expect = 5.7
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +1
Query: 217 RGPEGPRGAAGTLGDTGDLAAP 282
RGP GP G AG G G+ P
Sbjct: 183 RGPPGPAGEAGAPGPAGEPGTP 204
Score = 26.6 bits (56), Expect = 10.0
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +1
Query: 217 RGPEGPRGAAGTLGDTGDLAAP 282
+GP GP G G GD G+ P
Sbjct: 147 QGPPGPPGPPGAPGDPGEAGTP 168
>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
isoform a protein.
Length = 1758
Score = 27.5 bits (58), Expect = 5.7
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +1
Query: 214 LRGPEGPRGAAGTLGDTGDLAAP 282
LRGP+GP G G G G+ P
Sbjct: 1046 LRGPQGPSGLPGVPGFKGETGLP 1068
>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
isoform b protein.
Length = 1759
Score = 27.5 bits (58), Expect = 5.7
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +1
Query: 214 LRGPEGPRGAAGTLGDTGDLAAP 282
LRGP+GP G G G G+ P
Sbjct: 1047 LRGPQGPSGLPGVPGFKGETGLP 1069
>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) collagen
protein.
Length = 1795
Score = 27.5 bits (58), Expect = 5.7
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +1
Query: 214 LRGPEGPRGAAGTLGDTGDLAAP 282
LRGP+GP G G G G+ P
Sbjct: 1083 LRGPQGPSGLPGVPGFKGETGLP 1105
>J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 1 (col-1) gene, complete
cds. ).
Length = 296
Score = 27.5 bits (58), Expect = 5.7
Identities = 20/48 (41%), Positives = 20/48 (41%)
Frame = +1
Query: 214 LRGPEGPRGAAGTLGDTGDLAAPRCIRT*FLLVVGPLVSPRGYVPPPC 357
L GP GP GA G G G AP T V P P PPPC
Sbjct: 98 LPGPPGPAGAPGKPGKPGRPGAPGTPGTPGKPPVAP-CEPT--TPPPC 142
Score = 27.5 bits (58), Expect = 5.7
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +1
Query: 217 RGPEGPRGAAGTLGDTGDLAAP 282
RGP GP G AG G G+ P
Sbjct: 183 RGPPGPAGEAGAPGPAGEPGTP 204
Score = 26.6 bits (56), Expect = 10.0
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +1
Query: 217 RGPEGPRGAAGTLGDTGDLAAP 282
+GP GP G G GD G+ P
Sbjct: 147 QGPPGPPGPPGAPGDPGEAGTP 168
>AF043703-3|AAK21500.1| 357|Caenorhabditis elegans Calcium channel,
beta subunit protein2 protein.
Length = 357
Score = 27.5 bits (58), Expect = 5.7
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = -2
Query: 303 KLCSYATRRREVPRVPECTRGAARSLWSPQCPRGDPQCARELFLLG 166
+L +Y + P + RS+W P+CP +R + LLG
Sbjct: 121 RLANYMVSDEDPPVKHNTSDHQDRSIWEPKCPYKVVPSSRPIVLLG 166
>AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen protein
51 protein.
Length = 435
Score = 27.5 bits (58), Expect = 5.7
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 202 AAGTLRGPEGPRGAAGTLGDTG 267
A+G GP GP G AGT G+ G
Sbjct: 131 ASGCPAGPPGPPGEAGTDGEPG 152
>Z68219-2|CAA92476.1| 300|Caenorhabditis elegans Hypothetical
protein T05A1.2 protein.
Length = 300
Score = 27.1 bits (57), Expect = 7.6
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +1
Query: 220 GPEGPRGAAGTLGDTGDLAAP 282
GP GPRG AG G G +P
Sbjct: 226 GPRGPRGVAGIKGKDGAPGSP 246
>Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical
protein F17C8.2 protein.
Length = 296
Score = 27.1 bits (57), Expect = 7.6
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +1
Query: 220 GPEGPRGAAGTLGDTGDLAAP 282
GP GP G AG G G AP
Sbjct: 153 GPPGPEGPAGPAGSDGQPGAP 173
>U41748-3|AAA83336.1| 452|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 8 protein.
Length = 452
Score = 27.1 bits (57), Expect = 7.6
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +1
Query: 220 GPEGPRGAAGTLGDTGD 270
GP GPRGA G G TG+
Sbjct: 144 GPPGPRGAQGERGMTGN 160
>U39745-4|AAA80446.1| 325|Caenorhabditis elegans Collagen protein
173 protein.
Length = 325
Score = 27.1 bits (57), Expect = 7.6
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +1
Query: 220 GPEGPRGAAGTLGDTGD 270
GP GPRG G GD G+
Sbjct: 220 GPPGPRGPPGETGDEGE 236
>L23651-12|AAA27958.1| 305|Caenorhabditis elegans Collagen protein
90 protein.
Length = 305
Score = 27.1 bits (57), Expect = 7.6
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +1
Query: 220 GPEGPRGAAGTLGDTGDLAAP 282
G EGP+GA GT G G A P
Sbjct: 235 GEEGPKGAPGTPGSNGRDAYP 255
>AF040642-7|AAB94952.1| 329|Caenorhabditis elegans Collagen protein
68 protein.
Length = 329
Score = 27.1 bits (57), Expect = 7.6
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 220 GPEGPRGAAGTLGDTGDLAAP 282
GP GP GA GT G+ G+ +P
Sbjct: 141 GPPGPSGAPGTDGNPGNDGSP 161
>AF016687-1|AAC48094.2| 315|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 9 protein.
Length = 315
Score = 27.1 bits (57), Expect = 7.6
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 214 LRGPEGPRGAAGTLGDTGDL 273
L GP+GPRG AG G G L
Sbjct: 150 LPGPKGPRGPAGIEGKPGRL 169
>Z81503-1|CAB04111.1| 305|Caenorhabditis elegans Hypothetical
protein F14F7.1 protein.
Length = 305
Score = 26.6 bits (56), Expect = 10.0
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 220 GPEGPRGAAGTLGDTGDLAAP 282
GP GP+G G G++G AP
Sbjct: 186 GPPGPKGPRGAPGNSGRAGAP 206
Score = 26.6 bits (56), Expect = 10.0
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +1
Query: 220 GPEGPRGAAGTLGDTGDLAAP 282
GP+GPRGA G G G P
Sbjct: 189 GPKGPRGAPGNSGRAGAPGQP 209
>Z81104-3|CAD89749.1| 660|Caenorhabditis elegans Hypothetical
protein M199.5 protein.
Length = 660
Score = 26.6 bits (56), Expect = 10.0
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +1
Query: 214 LRGPEGPRGAAGTLGDTGD 270
L GP+G +GA GT G GD
Sbjct: 509 LDGPKGDKGADGTPGSKGD 527
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 26.6 bits (56), Expect = 10.0
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 220 GPEGPRGAAGTLGDTGDLAAP 282
GP+GP GAAG G G+ P
Sbjct: 247 GPKGPPGAAGAPGADGNPGGP 267
>Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical
protein C53B4.5 protein.
Length = 289
Score = 26.6 bits (56), Expect = 10.0
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +1
Query: 220 GPEGPRGAAGTLGDTG 267
GPEGP G AG G G
Sbjct: 165 GPEGPNGTAGNKGPAG 180
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 26.6 bits (56), Expect = 10.0
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 220 GPEGPRGAAGTLGDTGDLAAP 282
GP+GP GAAG G G+ P
Sbjct: 247 GPKGPPGAAGAPGADGNPGGP 267
>U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 3 protein.
Length = 302
Score = 26.6 bits (56), Expect = 10.0
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 220 GPEGPRGAAGTLGDTGDLAAP 282
GP GP+GA G G+ G P
Sbjct: 195 GPSGPQGAPGVPGEKGPTGEP 215
>U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protein
34 protein.
Length = 299
Score = 26.6 bits (56), Expect = 10.0
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 217 RGPEGPRGAAGTLGDTGDLAAP 282
+GP GP G G GD+G+ +P
Sbjct: 150 QGPPGPPGPPGPPGDSGEPGSP 171
>U50312-9|AAA92325.1| 294|Caenorhabditis elegans Collagen protein
10 protein.
Length = 294
Score = 26.6 bits (56), Expect = 10.0
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +1
Query: 220 GPEGPRGAAGTLGDTGDLAAP 282
GP GP G AG G G AP
Sbjct: 153 GPAGPEGPAGPAGPDGQPGAP 173
>U50312-7|AAA92323.2| 306|Caenorhabditis elegans Collagen protein
144 protein.
Length = 306
Score = 26.6 bits (56), Expect = 10.0
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +1
Query: 220 GPEGPRGAAGTLGDTGDLAAP 282
GP GP G AG G G AP
Sbjct: 165 GPAGPEGPAGPAGPDGQPGAP 185
>U50191-2|AAK31556.2| 335|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 10, isoform a protein.
Length = 335
Score = 26.6 bits (56), Expect = 10.0
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1
Query: 220 GPEGPRGAAGTLGDTG 267
GP GPRG++GT G G
Sbjct: 107 GPPGPRGSSGTPGKPG 122
>U50191-1|AAO38600.2| 372|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 10, isoform b protein.
Length = 372
Score = 26.6 bits (56), Expect = 10.0
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1
Query: 220 GPEGPRGAAGTLGDTG 267
GP GPRG++GT G G
Sbjct: 144 GPPGPRGSSGTPGKPG 159
>U41553-3|AAA83293.1| 289|Caenorhabditis elegans Collagen protein
19 protein.
Length = 289
Score = 26.6 bits (56), Expect = 10.0
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +1
Query: 217 RGPEGPRGAAGTLGDTGDLAAP 282
RGP GP G G G GD P
Sbjct: 170 RGPPGPVGGPGEQGPQGDAGRP 191
>U12966-7|AAK84534.1| 352|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 17 protein.
Length = 352
Score = 26.6 bits (56), Expect = 10.0
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 220 GPEGPRGAAGTLGDTGDLAA 279
GP GP GAAG G TG+ A
Sbjct: 241 GPIGPPGAAGEEGPTGEPGA 260
>M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen
protein.
Length = 298
Score = 26.6 bits (56), Expect = 10.0
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 217 RGPEGPRGAAGTLGDTGDLAAP 282
+GP GP G G GD+G+ +P
Sbjct: 150 QGPPGPPGPPGPPGDSGEPGSP 171
>M25481-1|AAA27987.1| 283|Caenorhabditis elegans collagen protein.
Length = 283
Score = 26.6 bits (56), Expect = 10.0
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +1
Query: 217 RGPEGPRGAAGTLGDTGDLAAP 282
RGP GP G G G GD P
Sbjct: 164 RGPPGPVGGPGEQGPQGDAGRP 185
>L12692-1|AAA17395.2| 356|Caenorhabditis elegans collagen protein.
Length = 356
Score = 26.6 bits (56), Expect = 10.0
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1
Query: 220 GPEGPRGAAGTLGDTG 267
GP GPRG++GT G G
Sbjct: 128 GPPGPRGSSGTPGKPG 143
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 26.6 bits (56), Expect = 10.0
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 220 GPEGPRGAAGTLGDTGDLAAP 282
GP+GP GAAG G G+ P
Sbjct: 247 GPKGPPGAAGAPGADGNPGGP 267
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 26.6 bits (56), Expect = 10.0
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 220 GPEGPRGAAGTLGDTGDLAAP 282
GP+GP GAAG G G+ P
Sbjct: 247 GPKGPPGAAGAPGADGNPGGP 267
>AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular
collagen RAM-4 protein.
Length = 299
Score = 26.6 bits (56), Expect = 10.0
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 217 RGPEGPRGAAGTLGDTGDLAAP 282
+GP GP G G GD+G+ +P
Sbjct: 150 QGPPGPPGPPGPPGDSGEPGSP 171
>AF068713-4|AAC17795.2| 398|Caenorhabditis elegans Hypothetical
protein T24A6.8 protein.
Length = 398
Score = 26.6 bits (56), Expect = 10.0
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -1
Query: 388 ETHYC-FTAEIGRVVVRTRADSQEVLPLVKIMFVCNAA 278
E HYC T G + R + E L L+KI+FVCN A
Sbjct: 274 EPHYCAHTVPFGPMK-RIKIQFNEFL-LLKILFVCNPA 309
>AF047652-1|AAO44912.1| 294|Caenorhabditis elegans Collagen protein
107, isoform b protein.
Length = 294
Score = 26.6 bits (56), Expect = 10.0
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +1
Query: 220 GPEGPRGAAGTLGDTGDLAAP 282
GPEGP G AG G G AP
Sbjct: 208 GPEGPAGPAGQDGAPGQDGAP 228
>AF025458-5|AAB70974.1| 298|Caenorhabditis elegans Squat protein 2
protein.
Length = 298
Score = 26.6 bits (56), Expect = 10.0
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 208 GTLRGPEGPRGAAGTLGDTGD 270
G GP+GP+G AG G G+
Sbjct: 247 GNSEGPQGPQGDAGRPGPVGE 267
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,752,674
Number of Sequences: 27780
Number of extensions: 204136
Number of successful extensions: 1715
Number of sequences better than 10.0: 82
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1656
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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