Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1170X
         (499 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   1.0  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    23   1.8  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   2.3  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   9.4  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -1

Query: 265 PCPRVYPRRRE 233
           PC R YPRR+E
Sbjct: 719 PCVRYYPRRKE 729


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = -2

Query: 222 SPQCPRGDPQCARELFLLGFLGIPGATLGLAERTDRRVPVYL-LVARQTRLHRRRL 58
           SP     DP+  +++ +  F       LG+ ERT+   P  L L   + R  R RL
Sbjct: 80  SPFLLLNDPELIKDILIRDFSKFANRGLGVFERTEPLSPHLLNLEVERWRPLRSRL 135


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = +2

Query: 197 GSPRGHCGDQRDLAAPRVHSGTRGTSRRRVAYEH 298
           G   G  G Q+D+  PR     R   R    Y+H
Sbjct: 63  GHHYGAAGSQQDMPYPRFPPYNRMDMRNATYYQH 96


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 8/20 (40%), Positives = 9/20 (45%)
 Frame = +1

Query: 397 RSASRCNYTETL*LISQGGW 456
           R+  RCN T     I   GW
Sbjct: 359 RAVKRCNATGAFSWIGSDGW 378


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,709
Number of Sequences: 438
Number of extensions: 2514
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)