Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1170X
         (499 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g56590.1 68414.m06508 clathrin adaptor complexes medium subun...    30   1.00 
At1g74870.1 68414.m08677 expressed protein contains similarity t...    27   7.0  

>At1g56590.1 68414.m06508 clathrin adaptor complexes medium subunit
           family protein contains Pfam profile: PF00928 adaptor
           complexes medium subunit family
          Length = 415

 Score = 29.9 bits (64), Expect = 1.00
 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -1

Query: 418 SYNGLPTFKTETHYCFTAEIGRVVVRTRADSQ-EVLPLVKIMFVCNAA 278
           S+  LP   + THY F  +I R  +   A SQ E+ PL+ I F+C  A
Sbjct: 43  SFKALPVIASPTHYLF--QIVRDGITFLACSQVEMPPLMAIEFLCRVA 88


>At1g74870.1 68414.m08677 expressed protein contains similarity to
           hypothetical proteins
          Length = 289

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +1

Query: 79  CLSCHQQIHRNAPICPLC 132
           CL CH +I  N   CP C
Sbjct: 236 CLFCHNKISENEARCPAC 253


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,138,764
Number of Sequences: 28952
Number of extensions: 186682
Number of successful extensions: 523
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)