Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1168
         (713 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|c...    26   4.7  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    26   6.1  

>SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 197

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = +1

Query: 97  FIDYDIYILIVFLVFSVCEGSLGLSILVSIIRSHGN---DYFQRFRIL 231
           F+   +  LI+ +   +  G +G+SI+  +I  +GN   DYF   R+L
Sbjct: 122 FVLIGLTCLILLITMILEPGLIGISIMKRLIGDNGNDERDYFVENRLL 169


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +1

Query: 97   FIDYDIYILIVFLVFSVCEGSLGLSILVSIIRSHGNDYFQRF 222
            +IDY I  L+  L F+   GS  LS ++ +  +   +Y+++F
Sbjct: 1711 YIDYPISELLQMLGFTASIGSSELSQVILMTVTTKKEYYKKF 1752


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,266,778
Number of Sequences: 5004
Number of extensions: 13204
Number of successful extensions: 26
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)