Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1167
         (508 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    26   0.22 
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    21   4.8  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    21   6.3  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   8.4  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   8.4  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   8.4  

>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 25.8 bits (54), Expect = 0.22
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +2

Query: 188 YSNFNLYLFDKFCLVVVTYSIETKI*FSSVFV 283
           YSNF+++LFD   +V +T S    +  ++VFV
Sbjct: 70  YSNFSVFLFDIITIVTLT-STSILLIVNAVFV 100


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 226 FSCCNIFDRDQNLIFFCVRHSFVYLV 303
           FS    FD  +NLIF  + +  +Y V
Sbjct: 735 FSAGGFFDIRKNLIFSLIANVAMYFV 760


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = +1

Query: 1   PHQTAWNYVKCYHEKDPKHALFL*THNPTQPFHT 102
           PH+    Y +C H K  + A       P   FHT
Sbjct: 484 PHELCDKYYRCVHGKPTEFAC-----RPGTVFHT 512


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 72  LQEKSVLRVFLVVAFHI 22
           L+EK  +++FL   FHI
Sbjct: 484 LREKPDVKIFLPFRFHI 500


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 144 IMIISENIAILYGVII 191
           IMI+  N+AI +G +I
Sbjct: 532 IMILVANVAISFGYLI 547


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 144 IMIISENIAILYGVII 191
           IMI+  N+AI +G +I
Sbjct: 532 IMILVANVAISFGYLI 547


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,558
Number of Sequences: 336
Number of extensions: 2280
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12049355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)