Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1167
         (508 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family |Schizosa...    26   2.8  
SPCC645.11c |mug117||meiotically upregulated gene Mug117|Schizos...    25   6.5  
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ...    25   6.5  

>SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 618

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +2

Query: 320 FLSSHTKISS*QQNLQGFVSTI-SNV*IICLSESNVYFFGEFNIFSTTIKSNST 478
           +L+ + KI     + Q F++ + +N+  +   +  VY+ G F+I+  T + N T
Sbjct: 262 YLAKYDKILVVTSHSQDFLNNVCTNIIDLTSKKQLVYYGGNFDIYMRTKEENET 315


>SPCC645.11c |mug117||meiotically upregulated gene
           Mug117|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 186

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = -3

Query: 440 IRQKSKRCSHLSILFTRYLLY*QNPVNSAASCLSLYE 330
           +R +++ C +  + + R L+Y      +A+SC ++YE
Sbjct: 79  LRGENRACPNAYMKYNRSLIYHGYSSYTASSCTAIYE 115


>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
           subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 668

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +2

Query: 80  IQPNRSIPH*C*IARTCLSRRYHDY 154
           + P  ++P  C   R C+S+ YH++
Sbjct: 26  VWPLVTVPRQCICLRWCISKEYHEF 50


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,923,169
Number of Sequences: 5004
Number of extensions: 37388
Number of successful extensions: 75
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)