Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1167
         (508 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY119149-1|AAM51009.1|  812|Drosophila melanogaster RE58177p pro...    29   2.7  
AF132143-1|AAD33590.1|  812|Drosophila melanogaster ribonucleosi...    29   2.7  
AE014134-1838|AAF52913.2|  812|Drosophila melanogaster CG5371-PA...    29   2.7  

>AY119149-1|AAM51009.1|  812|Drosophila melanogaster RE58177p
           protein.
          Length = 812

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = -1

Query: 307 IKRDKQSYDEHRRKLNFGLDRICYNN*TKFIEQI*IKVRII 185
           IKRD +  + H  K+   + ++CYN    F++ + I +++I
Sbjct: 15  IKRDGRQEEVHFDKITSRIQKLCYNLNMDFVDPVTITLQVI 55


>AF132143-1|AAD33590.1|  812|Drosophila melanogaster ribonucleoside
           reductase M1 subunitprotein.
          Length = 812

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = -1

Query: 307 IKRDKQSYDEHRRKLNFGLDRICYNN*TKFIEQI*IKVRII 185
           IKRD +  + H  K+   + ++CYN    F++ + I +++I
Sbjct: 15  IKRDGRQEEVHFDKITSRIQKLCYNLNMDFVDPVTITLQVI 55


>AE014134-1838|AAF52913.2|  812|Drosophila melanogaster CG5371-PA
           protein.
          Length = 812

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = -1

Query: 307 IKRDKQSYDEHRRKLNFGLDRICYNN*TKFIEQI*IKVRII 185
           IKRD +  + H  K+   + ++CYN    F++ + I +++I
Sbjct: 15  IKRDGRQEEVHFDKITSRIQKLCYNLNMDFVDPVTITLQVI 55


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,448,901
Number of Sequences: 53049
Number of extensions: 362471
Number of successful extensions: 742
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1825511424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)