Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1167
         (508 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    25   0.60 
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    22   3.2  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   4.2  
AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    21   5.6  
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    21   5.6  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   9.7  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   9.7  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 24.6 bits (51), Expect = 0.60
 Identities = 5/22 (22%), Positives = 15/22 (68%)
 Frame = -3

Query: 101 VWNGWVGLCVYKKRACFGSFSW 36
           +W+G+   C+++++  F + +W
Sbjct: 356 LWSGFCSQCIWQEKIVFAAVTW 377


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 6/20 (30%), Positives = 14/20 (70%)
 Frame = +1

Query: 7   QTAWNYVKCYHEKDPKHALF 66
           Q  + YV+C+++++P+   F
Sbjct: 123 QKTYQYVQCHYKQNPEKFFF 142


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -1

Query: 286 YDEHRRKLNFG 254
           YD HR ++NFG
Sbjct: 178 YDTHRCRINFG 188


>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +1

Query: 7   QTAWNYVKCYHEKD 48
           + AW + KC +E D
Sbjct: 126 EVAWQFGKCIYEND 139


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding protein
           protein.
          Length = 120

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +1

Query: 7   QTAWNYVKCYHEKD 48
           + AW + KC +E D
Sbjct: 100 EVAWQFGKCIYEND 113


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 411 VRATFTFLANLIFLVQ 458
           ++A F FLA+L  LVQ
Sbjct: 5   MKAGFLFLASLCLLVQ 20


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 411 VRATFTFLANLIFLVQ 458
           ++A F FLA+L  LVQ
Sbjct: 5   MKAGFLFLASLCLLVQ 20


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,289
Number of Sequences: 438
Number of extensions: 2557
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)