Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1164
         (790 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00003BFF38 Cluster: PREDICTED: hypothetical protein;...    42   0.018
UniRef50_UPI000049975A Cluster: related to competence proteins; ...    33   8.2  
UniRef50_Q02197 Cluster: N-terminal acetyltransferase C complex ...    33   8.2  

>UniRef50_UPI00003BFF38 Cluster: PREDICTED: hypothetical protein;
           n=1; Apis mellifera|Rep: PREDICTED: hypothetical protein
           - Apis mellifera
          Length = 193

 Score = 41.9 bits (94), Expect = 0.018
 Identities = 25/98 (25%), Positives = 46/98 (46%)
 Frame = +1

Query: 469 LFIQIEPKTFDDTLLAFLIATVTLILHLYAYRHQEPEQLQTSIGDFDYKPASFLIGMQPN 648
           LF+ I        L   ++A + +++   +  H   + +Q     F      ++ G+ P 
Sbjct: 17  LFVLISHLLISRELYLPILAIIDILI---SKSHSSSQNIQIEAPAFS--AGMYMAGLHPG 71

Query: 649 ESINYCDFNYGLPHTLEWDILQTYPSPETGNKSPYRVI 762
              ++C + +GLP+ L +   +   SPE G KSPYRV+
Sbjct: 72  NR-SFCKWYHGLPNALSYPASKVTWSPEIGEKSPYRVL 108


>UniRef50_UPI000049975A Cluster: related to competence proteins;
           n=1; Entamoeba histolytica HM-1:IMSS|Rep: related to
           competence proteins - Entamoeba histolytica HM-1:IMSS
          Length = 400

 Score = 33.1 bits (72), Expect = 8.2
 Identities = 20/43 (46%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +1

Query: 598 GDFDYKPASFLIGMQPNESINYC-DFN-YGLPHTLEWDILQTY 720
           GD+     SFL  M+P  SI  C D N YGLPH    D L  Y
Sbjct: 271 GDYHSSSKSFLEEMKPTASIISCGDHNRYGLPHQQAMDRLSLY 313


>UniRef50_Q02197 Cluster: N-terminal acetyltransferase C complex
           subunit MAK10; n=2; Saccharomyces cerevisiae|Rep:
           N-terminal acetyltransferase C complex subunit MAK10 -
           Saccharomyces cerevisiae (Baker's yeast)
          Length = 733

 Score = 33.1 bits (72), Expect = 8.2
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
 Frame = +1

Query: 499 DDTLLAFLIATVTLILHLYAYRHQEPEQLQTSIG-DFDYKPASFLIGMQPNESINYCDFN 675
           D T+L     T   +LH+  +  Q P + ++SIG +   + ++ L+    N S N C + 
Sbjct: 349 DRTVLGKFSYTQFYLLHVKEFSAQTPSEFESSIGNELIQESSNMLLEWYQNCSQNTCRYR 408

Query: 676 YGLPHTL-EWDILQ 714
            G    L  WD LQ
Sbjct: 409 QGFNRQLILWDSLQ 422


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 775,958,360
Number of Sequences: 1657284
Number of extensions: 15723298
Number of successful extensions: 33046
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 31986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33045
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 67085240885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)