Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1164
         (790 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr...    28   1.8  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    28   1.8  
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4...    28   1.8  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      27   4.0  
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    26   5.4  
SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|c...    26   7.1  
SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces po...    26   7.1  

>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 808

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +1

Query: 49  INNLQDNIFNLRI*ELCDGEVREYTKKINSVCGLWFILYL 168
           + NL+DN ++  +   CD  V EY   IN VC   ++  L
Sbjct: 632 LRNLEDNHWDEEVQAYCDSSVDEYDDPIN-VCHKGYVTLL 670


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 8/26 (30%), Positives = 19/26 (73%)
 Frame = -2

Query: 558 GVEMQYKRYGCYQKRKQSIVECLRLN 481
           G+ + Y RYG ++  +++ ++CLR++
Sbjct: 443 GIGILYDRYGSHEHAEEAFMQCLRMD 468


>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
           Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 684

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +1

Query: 433 VKNDEMPTDIRCLFIQIEPKTFDDTLLAFLIATVTLILHLYAYRHQE 573
           V N+E+ T    LF+Q    T D+ +++ +   +  +L  Y+Y   E
Sbjct: 422 VSNNELSTKDEYLFLQKSSLTEDNLIVSLVPKILAYLLDAYSYERDE 468


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 186 C*IFYCQIQNEPQATDTVNFFCIFSYFTIA*FLN 85
           C  F+  I   P  ++ V FFC F YF++  F +
Sbjct: 88  CRRFHIAIFIHPYDSNVVPFFCFFFYFSLFSFFS 121


>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
 Frame = +1

Query: 481 IEPKTFDDTLLA---FLIATVTLILHLYAYRHQEPEQLQTSIGDFDYKPASFLI 633
           I  + FDDT  A   F+ A VTL    + Y H  P   +  +  ++Y P    I
Sbjct: 257 IGSQPFDDTNSARNHFITALVTLGEGNHNYHHAFPNDYRNGLRWYEYDPTKIFI 310


>SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +1

Query: 469 LFIQIEPKTFDDTLLAFLIATVTLILHLYAYRHQEPEQLQTSIGDFDYKPA-SFLIG 636
           +FI + PK+FD ++L   +A     L    +    P    T+ GDF      S LIG
Sbjct: 152 IFILLVPKSFDTSMLNLFVAVSAGSLLGDVFLQLLPTVYSTNGGDFPASSVYSILIG 208


>SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 586

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +1

Query: 457 DIRCLFIQIEPKTFDDTLLAFLIATVTLILHLYAYRHQEPEQLQTSIGDFD 609
           ++R +FI  + K     ++  L+      LHL   R +   +LQ +IG+ D
Sbjct: 336 NMRHIFIFRKMKFIQQVMVEELLTRKKSFLHLLERRERHAARLQQAIGEVD 386


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,359,069
Number of Sequences: 5004
Number of extensions: 72197
Number of successful extensions: 172
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)