Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1164
(790 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0937 - 7388230-7388283,7388957-7389091,7389201-7389365,738... 31 1.0
01_01_0933 - 7368672-7368785,7368860-7368895,7369581-7369715,736... 31 1.0
12_01_1112 - 11866376-11866447,11866528-11866662,11866772-118669... 29 4.2
02_02_0440 - 10273032-10273259,10273423-10273461,10273875-102741... 29 4.2
11_06_0119 + 20321687-20323624 29 5.6
03_06_0582 - 34891613-34891795,34892407-34892466,34893134-348932... 28 7.4
06_03_0522 - 21726317-21726634,21727202-21727654,21727771-217280... 28 9.7
03_01_0438 + 3399203-3399297,3399389-3399480,3399638-3399750,340... 28 9.7
>01_01_0937 -
7388230-7388283,7388957-7389091,7389201-7389365,
7389436-7389516,7389692-7389767,7389855-7389988,
7390082-7390174,7390885-7391018,7391125-7391533,
7392381-7392593
Length = 497
Score = 31.1 bits (67), Expect = 1.0
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -3
Query: 419 PPNSVSAFCVFVKKKIQQVTKF*WNQL*VNFTVY 318
PP+ V+A +F+ K I Q TK WN ++T Y
Sbjct: 412 PPSLVAASAIFLAKFILQPTKHPWNSTLAHYTQY 445
>01_01_0933 -
7368672-7368785,7368860-7368895,7369581-7369715,
7369825-7369989,7370060-7370140,7370316-7370391,
7370479-7370612,7370706-7370798,7371860-7372188,
7372290-7372350,7372407-7372778
Length = 531
Score = 31.1 bits (67), Expect = 1.0
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -3
Query: 419 PPNSVSAFCVFVKKKIQQVTKF*WNQL*VNFTVY 318
PP+ V+A +F+ K I Q TK WN ++T Y
Sbjct: 414 PPSLVAASAIFLAKFILQPTKHPWNSTLAHYTQY 447
>12_01_1112 -
11866376-11866447,11866528-11866662,11866772-11866921,
11867263-11867338,11867426-11867559,11867655-11867747,
11868456-11868589,11868696-11868744,11869271-11869441,
11870291-11870452
Length = 391
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -3
Query: 419 PPNSVSAFCVFVKKKIQQVTKF*WNQL*VNFTVY 318
PP+ V+A +F+ K I Q K WN ++T Y
Sbjct: 300 PPSLVAASAIFLAKFILQPAKHPWNSTLAHYTQY 333
>02_02_0440 -
10273032-10273259,10273423-10273461,10273875-10274123,
10274203-10274329,10275009-10275251,10275359-10275457,
10275566-10275681,10275813-10276039,10276164-10276276,
10276402-10276522,10276641-10276855,10277042-10277225,
10277739-10278048,10278155-10278249,10278473-10278485
Length = 792
Score = 29.1 bits (62), Expect = 4.2
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 49 INNLQDNIFNLRI*ELCDGEVREYTKKINSVCGLWFI 159
++N + + +I E+C G + E IN+ G WFI
Sbjct: 650 VHNKETCLLIAQIVEICAGRIEEAASMINNTEGSWFI 686
>11_06_0119 + 20321687-20323624
Length = 645
Score = 28.7 bits (61), Expect = 5.6
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +1
Query: 304 HIRKL*TVKLTYN*FHQNLVTCWIFFLTNTQNAD 405
++ +L + L+YN F+Q L +CW + LT+ D
Sbjct: 237 NLTRLEKLDLSYNNFNQPLASCWFWNLTSLTYLD 270
>03_06_0582 -
34891613-34891795,34892407-34892466,34893134-34893280,
34893502-34893657,34893745-34893828,34893907-34893995,
34894575-34894689,34894776-34894899,34895080-34895219,
34895868-34895929,34896042-34896108,34896185-34896295,
34896868-34896945,34897074-34897274,34897492-34897563,
34897630-34897693,34898084-34898154,34898328-34898474
Length = 656
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 643 PNESINYCDFNYGLPHTLEWDILQTYPSP 729
P+E+I +F+ PHT W I++TY P
Sbjct: 265 PSENITVKEFD---PHTCTWSIVKTYGKP 290
>06_03_0522 -
21726317-21726634,21727202-21727654,21727771-21728025,
21728109-21728249,21728404-21728565,21728660-21728820,
21731598-21731733
Length = 541
Score = 27.9 bits (59), Expect = 9.7
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 585 QLFGFLMPVGVEMQYKRYGCYQKRKQ 508
+L G+ +P G EM YGC RK+
Sbjct: 425 KLAGYDVPAGTEMVINLYGCNMNRKE 450
>03_01_0438 +
3399203-3399297,3399389-3399480,3399638-3399750,
3400345-3400610,3400793-3400864,3401023-3401098,
3401241-3401339,3401432-3401586,3401679-3401783,
3401880-3401966,3402459-3402543,3402626-3402734,
3403468-3403544,3403635-3403715,3404137-3404328,
3404415-3404528,3404650-3404742,3404864-3404990,
3405075-3405151,3405455-3405502,3405588-3405657,
3405737-3405810,3405895-3406005,3406222-3406300,
3406936-3408320
Length = 1293
Score = 27.9 bits (59), Expect = 9.7
Identities = 8/33 (24%), Positives = 21/33 (63%)
Frame = +2
Query: 62 KTTFSIYEFKNYAMVKYENIQKKLTVSVACGSF 160
+ F+++ F+ +KY ++++++ +V CG F
Sbjct: 452 ENVFNLFSFREVVGMKYVDVRRRIPDAVVCGIF 484
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,926,123
Number of Sequences: 37544
Number of extensions: 395801
Number of successful extensions: 687
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -