Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1164
         (790 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2412| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.5  
SB_47750| Best HMM Match : Metallothio (HMM E-Value=9)                 29   5.7  
SB_57647| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                29   5.7  
SB_42949| Best HMM Match : SRCR (HMM E-Value=1.6e-14)                  28   9.9  

>SB_2412| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 589

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -3

Query: 548 CSISVTVAIRNASKVSSNVFGSICMNKHRISVG-ISSFFTHIFIPPNS 408
           CS  + V   +    + N+ GS+C+N  R++ G +   +  I I P+S
Sbjct: 521 CSPDLLVLPSDLRYFTKNILGSLCVNPGRLAKGQVGGTYARILIQPDS 568


>SB_47750| Best HMM Match : Metallothio (HMM E-Value=9)
          Length = 191

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 174 YCQIQNEPQATDTVNFFCIFSYFTIA*FLNS 82
           YC++Q+ P A  TV  F   ++F +   +NS
Sbjct: 85  YCELQSTPSALSTVETFAELTWFVLTNQMNS 115


>SB_57647| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 318

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = +1

Query: 613 KPASFLIGMQPNESINYCDFNYGLPHTLEWDILQTYPSPETGNKSPYRVI 762
           +P   + G +P  S+N     YGL +  +     TYP   TGN     V+
Sbjct: 71  QPTKNINGQEPEPSMNNWVTRYGLSYASDGVTWTTYPHEFTGNSDRDTVV 120


>SB_42949| Best HMM Match : SRCR (HMM E-Value=1.6e-14)
          Length = 340

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 64  LVNYLFSFKIFHFDRCCARRE 2
           +VN    F +  F RCCARRE
Sbjct: 133 IVNRTLCFSLSAFGRCCARRE 153


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,081,981
Number of Sequences: 59808
Number of extensions: 502526
Number of successful extensions: 1245
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1244
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2167838629
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)