Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1164
(790 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z11527-1|CAA77616.1| 614|Drosophila melanogaster CYS3HIS finger... 30 3.1
BT021256-1|AAX33404.1| 608|Drosophila melanogaster RE58038p pro... 30 3.1
AY051832-1|AAK93256.1| 484|Drosophila melanogaster LD33756p pro... 30 3.1
AE014297-3282|AAO41594.1| 599|Drosophila melanogaster CG4620-PB... 30 3.1
AE014297-3281|AAO41593.1| 599|Drosophila melanogaster CG4620-PA... 30 3.1
X67239-1|CAA47664.1| 1077|Drosophila melanogaster hairless protein. 30 4.1
M95192-1|AAA28607.1| 1059|Drosophila melanogaster hairless prote... 30 4.1
BT015220-1|AAT94449.1| 1077|Drosophila melanogaster RE41617p pro... 30 4.1
AY051806-1|AAK93230.1| 619|Drosophila melanogaster LD32021p pro... 30 4.1
AE014297-2832|AAN14358.1| 1059|Drosophila melanogaster CG5460-PC... 30 4.1
AE014297-2831|AAF55791.1| 1059|Drosophila melanogaster CG5460-PB... 30 4.1
AE014297-2830|AAN14357.1| 1077|Drosophila melanogaster CG5460-PD... 30 4.1
AE014297-2829|AAF55790.1| 1077|Drosophila melanogaster CG5460-PA... 30 4.1
>Z11527-1|CAA77616.1| 614|Drosophila melanogaster CYS3HIS finger
protein protein.
Length = 614
Score = 30.3 bits (65), Expect = 3.1
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Frame = +1
Query: 451 PTDIRCLFIQIEPKTFDD---TLLAFLIATVTLILHLYAYRHQEPEQLQTSIGDFDYKPA 621
P + C F +EP + DD L+ +A +L+ A + L SI DF+
Sbjct: 303 PRSVFCAFAHVEPCSMDDPRENSLSASLANTSLLTRSSAPINIPNTTLSNSINDFN--SG 360
Query: 622 SFLIGMQPNESINYCDFNY 678
SF + + P+ S+ Y N+
Sbjct: 361 SFAVNI-PSSSLTYSPTNH 378
>BT021256-1|AAX33404.1| 608|Drosophila melanogaster RE58038p
protein.
Length = 608
Score = 30.3 bits (65), Expect = 3.1
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Frame = +1
Query: 451 PTDIRCLFIQIEPKTFDD---TLLAFLIATVTLILHLYAYRHQEPEQLQTSIGDFDYKPA 621
P + C F +EP + DD L+ +A +L+ A + L SI DF+
Sbjct: 297 PRSVFCAFAHVEPCSMDDPRENSLSASLANTSLLTRSSAPINIPNTTLSNSINDFN--SG 354
Query: 622 SFLIGMQPNESINYCDFNY 678
SF + + P+ S+ Y N+
Sbjct: 355 SFAVNI-PSSSLTYSPTNH 372
>AY051832-1|AAK93256.1| 484|Drosophila melanogaster LD33756p
protein.
Length = 484
Score = 30.3 bits (65), Expect = 3.1
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Frame = +1
Query: 451 PTDIRCLFIQIEPKTFDD---TLLAFLIATVTLILHLYAYRHQEPEQLQTSIGDFDYKPA 621
P + C F +EP + DD L+ +A +L+ A + L SI DF+
Sbjct: 173 PRSVFCAFAHVEPCSMDDPRENSLSASLANTSLLTRSSAPINIPNTTLSNSINDFN--SG 230
Query: 622 SFLIGMQPNESINYCDFNY 678
SF + + P+ S+ Y N+
Sbjct: 231 SFAVNI-PSSSLTYSPTNH 248
>AE014297-3282|AAO41594.1| 599|Drosophila melanogaster CG4620-PB,
isoform B protein.
Length = 599
Score = 30.3 bits (65), Expect = 3.1
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Frame = +1
Query: 451 PTDIRCLFIQIEPKTFDD---TLLAFLIATVTLILHLYAYRHQEPEQLQTSIGDFDYKPA 621
P + C F +EP + DD L+ +A +L+ A + L SI DF+
Sbjct: 288 PRSVFCAFAHVEPCSMDDPRENSLSASLANTSLLTRSSAPINIPNTTLSNSINDFN--SG 345
Query: 622 SFLIGMQPNESINYCDFNY 678
SF + + P+ S+ Y N+
Sbjct: 346 SFAVNI-PSSSLTYSPTNH 363
>AE014297-3281|AAO41593.1| 599|Drosophila melanogaster CG4620-PA,
isoform A protein.
Length = 599
Score = 30.3 bits (65), Expect = 3.1
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Frame = +1
Query: 451 PTDIRCLFIQIEPKTFDD---TLLAFLIATVTLILHLYAYRHQEPEQLQTSIGDFDYKPA 621
P + C F +EP + DD L+ +A +L+ A + L SI DF+
Sbjct: 288 PRSVFCAFAHVEPCSMDDPRENSLSASLANTSLLTRSSAPINIPNTTLSNSINDFN--SG 345
Query: 622 SFLIGMQPNESINYCDFNY 678
SF + + P+ S+ Y N+
Sbjct: 346 SFAVNI-PSSSLTYSPTNH 363
>X67239-1|CAA47664.1| 1077|Drosophila melanogaster hairless protein.
Length = 1077
Score = 29.9 bits (64), Expect = 4.1
Identities = 20/60 (33%), Positives = 28/60 (46%)
Frame = -3
Query: 539 SVTVAIRNASKVSSNVFGSICMNKHRISVGISSFFTHIFIPPNSVSAFCVFVKKKIQQVT 360
SV + SK S+ V S + RI G+S TH PP+S +A V+ Q V+
Sbjct: 515 SVPARLEQMSKTSA-VIASTTTSSDRIGGGLSHALTHKVSPPSSATAAGRLVEYHTQHVS 573
>M95192-1|AAA28607.1| 1059|Drosophila melanogaster hairless protein
protein.
Length = 1059
Score = 29.9 bits (64), Expect = 4.1
Identities = 20/60 (33%), Positives = 28/60 (46%)
Frame = -3
Query: 539 SVTVAIRNASKVSSNVFGSICMNKHRISVGISSFFTHIFIPPNSVSAFCVFVKKKIQQVT 360
SV + SK S+ V S + RI G+S TH PP+S +A V+ Q V+
Sbjct: 497 SVPARLEQMSKTSA-VIASTTTSSDRIGGGLSHALTHKVSPPSSATAAGRLVEYHTQHVS 555
>BT015220-1|AAT94449.1| 1077|Drosophila melanogaster RE41617p
protein.
Length = 1077
Score = 29.9 bits (64), Expect = 4.1
Identities = 20/60 (33%), Positives = 28/60 (46%)
Frame = -3
Query: 539 SVTVAIRNASKVSSNVFGSICMNKHRISVGISSFFTHIFIPPNSVSAFCVFVKKKIQQVT 360
SV + SK S+ V S + RI G+S TH PP+S +A V+ Q V+
Sbjct: 515 SVPARLEQMSKTSA-VIASTTTSSDRIGGGLSHALTHKVSPPSSATAAGRLVEYHTQHVS 573
>AY051806-1|AAK93230.1| 619|Drosophila melanogaster LD32021p
protein.
Length = 619
Score = 29.9 bits (64), Expect = 4.1
Identities = 20/60 (33%), Positives = 28/60 (46%)
Frame = -3
Query: 539 SVTVAIRNASKVSSNVFGSICMNKHRISVGISSFFTHIFIPPNSVSAFCVFVKKKIQQVT 360
SV + SK S+ V S + RI G+S TH PP+S +A V+ Q V+
Sbjct: 57 SVPARLEQMSKTSA-VIASTTTSSDRIGGGLSHALTHKVSPPSSATAAGRLVEYHTQHVS 115
>AE014297-2832|AAN14358.1| 1059|Drosophila melanogaster CG5460-PC,
isoform C protein.
Length = 1059
Score = 29.9 bits (64), Expect = 4.1
Identities = 20/60 (33%), Positives = 28/60 (46%)
Frame = -3
Query: 539 SVTVAIRNASKVSSNVFGSICMNKHRISVGISSFFTHIFIPPNSVSAFCVFVKKKIQQVT 360
SV + SK S+ V S + RI G+S TH PP+S +A V+ Q V+
Sbjct: 497 SVPARLEQMSKTSA-VIASTTTSSDRIGGGLSHALTHKVSPPSSATAAGRLVEYHTQHVS 555
>AE014297-2831|AAF55791.1| 1059|Drosophila melanogaster CG5460-PB,
isoform B protein.
Length = 1059
Score = 29.9 bits (64), Expect = 4.1
Identities = 20/60 (33%), Positives = 28/60 (46%)
Frame = -3
Query: 539 SVTVAIRNASKVSSNVFGSICMNKHRISVGISSFFTHIFIPPNSVSAFCVFVKKKIQQVT 360
SV + SK S+ V S + RI G+S TH PP+S +A V+ Q V+
Sbjct: 497 SVPARLEQMSKTSA-VIASTTTSSDRIGGGLSHALTHKVSPPSSATAAGRLVEYHTQHVS 555
>AE014297-2830|AAN14357.1| 1077|Drosophila melanogaster CG5460-PD,
isoform D protein.
Length = 1077
Score = 29.9 bits (64), Expect = 4.1
Identities = 20/60 (33%), Positives = 28/60 (46%)
Frame = -3
Query: 539 SVTVAIRNASKVSSNVFGSICMNKHRISVGISSFFTHIFIPPNSVSAFCVFVKKKIQQVT 360
SV + SK S+ V S + RI G+S TH PP+S +A V+ Q V+
Sbjct: 515 SVPARLEQMSKTSA-VIASTTTSSDRIGGGLSHALTHKVSPPSSATAAGRLVEYHTQHVS 573
>AE014297-2829|AAF55790.1| 1077|Drosophila melanogaster CG5460-PA,
isoform A protein.
Length = 1077
Score = 29.9 bits (64), Expect = 4.1
Identities = 20/60 (33%), Positives = 28/60 (46%)
Frame = -3
Query: 539 SVTVAIRNASKVSSNVFGSICMNKHRISVGISSFFTHIFIPPNSVSAFCVFVKKKIQQVT 360
SV + SK S+ V S + RI G+S TH PP+S +A V+ Q V+
Sbjct: 515 SVPARLEQMSKTSA-VIASTTTSSDRIGGGLSHALTHKVSPPSSATAAGRLVEYHTQHVS 573
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,994,900
Number of Sequences: 53049
Number of extensions: 738861
Number of successful extensions: 1294
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1294
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3654740856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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