Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1164
         (790 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    26   0.35 
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   5.7  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   7.5  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   9.9  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   9.9  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   9.9  

>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 26.2 bits (55), Expect = 0.35
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 656 MLSFGCIPIKNEAGL*SKSPIDV 588
           ML  GC+ +KNE  +  K+ +D+
Sbjct: 50  MLESGCVSLKNEVNIMMKNVVDI 72


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 520 ETQAKYRRMSSAQSV 476
           ETQ+ YR M   QSV
Sbjct: 391 ETQSNYREMEKRQSV 405


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 382 LTNTQNADTELGGMKMCV 435
           L NT  A +E GG+  C+
Sbjct: 165 LRNTSIAKSEFGGITQCI 182


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -1

Query: 418 LLTRYQHFVCLLRKKSNRLPNFDGISYRLISQ 323
           L T  +  + ++  +  RLP+FD   +RL+ Q
Sbjct: 806 LWTSVKKALMIVGIRPERLPSFDDECWRLMEQ 837


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -1

Query: 418 LLTRYQHFVCLLRKKSNRLPNFDGISYRLISQ 323
           L T  +  + ++  +  RLP+FD   +RL+ Q
Sbjct: 844 LWTSVKKALMIVGIRPERLPSFDDECWRLMEQ 875


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 569 KNPNSCRRQSVILTISQPH 625
           ++P+S R  S  L  SQPH
Sbjct: 36  RSPSSSRSPSPSLLTSQPH 54


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 226,945
Number of Sequences: 438
Number of extensions: 5329
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)