Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1164
         (790 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g16600.1 68417.m02511 glycogenin glucosyltransferase (glycoge...    29   4.6  
At3g29430.1 68416.m03697 geranylgeranyl pyrophosphate synthase, ...    28   8.1  

>At4g16600.1 68417.m02511 glycogenin glucosyltransferase
           (glycogenin)-related low similarity to glycogenin-1 from
           Rattus norvegicus [SP|O08730], Homo sapiens [GI:496895],
           Mus musculus [SP|Q9R062]
          Length = 442

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = +2

Query: 71  FSIYEFKNYAMVKYENIQKKLTVSV-ACGSFCIWQ*KIQHPVL*DSMFRLRPRMCLKRDV 247
           +S+ ++    M+  +N+  K T  +  CG FC     I   +    +F L+P M + RD+
Sbjct: 149 WSLSDYDRVVMLDVDNLFLKNTDELFQCGQFCAVF--INPCIFHTGLFVLQPSMEVFRDM 206

Query: 248 LSELLLKNE 274
           L EL +K +
Sbjct: 207 LHELEVKRD 215


>At3g29430.1 68416.m03697 geranylgeranyl pyrophosphate synthase,
           putative / GGPP synthetase, putative /
           farnesyltranstransferase, putative similar to gi:413730;
           similar to geranylgeranyl pyrophosphate synthase,
           chloroplast precursor GB:P34802 from [Arabidopsis
           thaliana]
          Length = 357

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = +2

Query: 74  SIYEFKNYAMVKYENIQKKLTVSVACGSFCIWQ*KIQHPVL*DSMFRLRPRMCL 235
           S ++FK+Y + K E++   L VSV        Q  +++ +L     R+RP +C+
Sbjct: 59  SAFDFKSYMIRKAESVSAALNVSVPLQEPLTIQEAVRYSLLAGGK-RVRPLLCI 111


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,847,132
Number of Sequences: 28952
Number of extensions: 352644
Number of successful extensions: 722
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1775300800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)